Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 141 8e-29
seq6771 131 2e-25
seq9711 114 1e-20
seq10234 87.8 2e-12
>seq7200
Length=105881
Score = 141 bits (156), Expect = 8e-29
Identities = 159/211 (75%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189
|||| ||||| ||||||||| ||||| || || ||||| || || | || || |
Sbjct 105349 ACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCA--GAAAGTGTGCGACCGTCCT 105292
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | |||||| || || | ||||||| |||||| ||||| ||||| ||||| |||||||
Sbjct 105291 CAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTT 105232
Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
|||||||| ||||| ||| | ||||| |||| ||||||||| | || | ||||
Sbjct 105231 GAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTT 105172
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || |||||||| |||||||| |||||
Sbjct 105171 TTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||||| |||||||||||||| ||||||||||| || || | ||| || | |||
Sbjct 105116 ATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCAAGTTG 105057
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||||| || | ||||||| ||||| || || || |||||||||||||||||||||||
Sbjct 105056 CTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTT 104997
Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
||||| || | || || |||| ||| || || | ||| | || || || ||
Sbjct 104996 CGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGT 104937
Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| ||||| |||||||| ||||| ||| ||
Sbjct 104936 CAGGGTTTTAACAAAAATCTGCATTCCGCCAC 104905
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||||||||||||||| || || | ||| || || | |||
Sbjct 104887 TGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGT 104828
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | ||||| || |||||||| || || ||||||||||| || ||||| |||
Sbjct 104827 TTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTT 104768
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
||| | || | || | ||||| |||| ||| || || ||||| | || || || ||
Sbjct 104767 GCTTTCA-CGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGT 104709
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
| || || || ||||| |||||
Sbjct 104708 CAACGTCTTCACGAAAATCTGCAT 104685
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189
|||| ||||| ||||||||| ||||| || |||||||| ||| | | | || |
Sbjct 105577 ACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATC--TGAAAGCGTGCGGCCGTCCT 105520
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
| | || ||||| ||| | ||||| | ||||| ||||| || || ||||| ||||| |
Sbjct 105519 CTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCT 105460
Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308
||||||| ||||| || | || | ||||| || | || || || | || | ||
Sbjct 105459 GAATTTTGGCTTTGA-CGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTC 105401
Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | ||||| ||||||||||||||
Sbjct 105400 TTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 82.4 bits (90), Expect = 7e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAAT 45194
||||| |||||||| || || ||||| || || || || | || ||| ||||
Sbjct 105800 ATGCAAGGTTGATTCTTTCTGAATATTGTAGTCA--GAAAGTGTACGACCATCTTCCAGC 105743
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
|||||||| || | || || | || || || || || || ||||| ||||| ||||||
Sbjct 105742 TGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAATT 105683
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
|| ||||| ||| | ||||| || | ||| ||||| | |||| || || ||
Sbjct 105682 TTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCA 105623
Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340
|| | ||||| || |||||||||||
Sbjct 105622 GTCAATGTTTTAACGAAAATTTGCAT 105597
>seq6771
Length=7421
Score = 131 bits (144), Expect = 2e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| |||||||| || | || || ||||| ||||| |||||||| ||||| ||||| |||
Sbjct 324 ATGCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCG 265
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | |||||| || || | || | || ||||| || ||
Sbjct 264 GAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGA 205
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||||||||| ||||| || || ||||| |||| ||||| |||| ||
Sbjct 204 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCA 145
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| || | ||||| || || ||||||||||| || || |||||
Sbjct 144 ACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|||||||| || | ||| |||| || || ||||||||||||||||| || |||||
Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || | ||| || | ||||| || ||| | || | || || || ||||| |||
Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| || ||||| || || ||||| ||| | || | |||| || || |||| || ||
Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCA-CGTTCTCTATAGTATCCGAAGCTTCAAC 371
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || | ||||| ||||| ||||||||||| || || |||||
Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323
>seq9711
Length=151070
Score = 114 bits (126), Expect = 1e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| |||| ||||||||| ||| | || |||| ||||| ||||| || || ||||| ||
Sbjct 103947 ATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTT 103888
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|||||||||||| ||||| ||| | ||||| |||| || || || | ||||
Sbjct 103887 ATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAAT 103828
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||| || |||||||| |||||||| |||||
Sbjct 103827 GGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || ||||| ||||| ||||| || ||| | ||| || ||
Sbjct 104456 ACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCG 104397
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||| || ||| | |||| || |||||| || || |||||||| ||||| ||||||
Sbjct 104396 AGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGA 104337
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
||||| || | || | || | ||||| |||| |||||| || || || | |||||
Sbjct 104336 ATTTTCGCCTTCA-CGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTT 104278
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| |||| ||| || ||||| || |||||
Sbjct 104277 GCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || |||||||| |||| |||||| || ||||| || || || ||||||||
Sbjct 104249 ATACCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATC- 104191
Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | | || || | || ||||| ||| | ||||| | ||||| ||||
Sbjct 104190 -TGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCG 104132
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| || || ||||| ||||| |||||||| ||||| || | || | ||||| || |
Sbjct 104131 GTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGA-CGTTCTCGATCGTGTCTGACGCT 104073
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || | || || || || | ||||| || |||||||||||
Sbjct 104072 TCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
>seq10234
Length=192330
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACT-GGAGCGTTTTAAAACA 124165
|| || ||||||||||| | || ||| ||| || ||||||| | ||| || || |
Sbjct 2078 CAATATGACATGTGGAACGTTAAACCAACAGATCTGTGGGATTGGGATGAATTGAAGAGG 2019
Query 124166 ACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAAC 124225
| | || ||| |||||| || | || ||||| || | || ||||| ||||| |
Sbjct 2018 AAG-ATCGCGAAGCACGGAGTGAGGAATTCGCTTTTAATAGCACCTATGCCAACGGCCTC 1960
Query 124226 CACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGT 124285
|| || || |||||||| || ||||||||| | || |||| ||| | |||| | |||||
Sbjct 1959 GACGGCACAGATTTTAGGGAATAACGAATCCATTGAACCGTACACGAGCAATATCTACGT 1900
Query 124286 GCGACGAGTGTTAGCCGGCGATTTT 124310
| | || || ||| | || || |||
Sbjct 1899 GAGGCGCGTATTATCTGGAGAGTTT 1875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451934631114560
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