Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7200 141 8e-29 seq6771 131 2e-25 seq9711 114 1e-20 seq10234 87.8 2e-12 >seq7200 Length=105881 Score = 141 bits (156), Expect = 8e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 |||| ||||| ||||||||| ||||| || || ||||| || || | || || | Sbjct 105349 ACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCA--GAAAGTGTGCGACCGTCCT 105292 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | |||||| || || | ||||||| |||||| ||||| ||||| ||||| ||||||| Sbjct 105291 CAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTT 105232 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||||| ||||| ||| | ||||| |||| ||||||||| | || | |||| Sbjct 105231 GAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTT 105172 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||||||| |||||||| ||||| Sbjct 105171 TTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| |||||||||||||| ||||||||||| || || | ||| || | ||| Sbjct 105116 ATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCAAGTTG 105057 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| || | ||||||| ||||| || || || ||||||||||||||||||||||| Sbjct 105056 CTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTT 104997 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || || |||| ||| || || | ||| | || || || || Sbjct 104996 CGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGT 104937 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| |||||||| ||||| ||| || Sbjct 104936 CAGGGTTTTAACAAAAATCTGCATTCCGCCAC 104905 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||||||||| || || | ||| || || | ||| Sbjct 104887 TGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGT 104828 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| || |||||||| || || ||||||||||| || ||||| ||| Sbjct 104827 TTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTT 104768 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| | || | || | ||||| |||| ||| || || ||||| | || || || || Sbjct 104767 GCTTTCA-CGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGT 104709 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| ||||| Sbjct 104708 CAACGTCTTCACGAAAATCTGCAT 104685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 |||| ||||| ||||||||| ||||| || |||||||| ||| | | | || | Sbjct 105577 ACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATC--TGAAAGCGTGCGGCCGTCCT 105520 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || ||||| ||| | ||||| | ||||| ||||| || || ||||| ||||| | Sbjct 105519 CTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCT 105460 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 ||||||| ||||| || | || | ||||| || | || || || | || | || Sbjct 105459 GAATTTTGGCTTTGA-CGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTC 105401 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| |||||||||||||| Sbjct 105400 TTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAAT 45194 ||||| |||||||| || || ||||| || || || || | || ||| |||| Sbjct 105800 ATGCAAGGTTGATTCTTTCTGAATATTGTAGTCA--GAAAGTGTACGACCATCTTCCAGC 105743 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| || | || || | || || || || || || ||||| ||||| |||||| Sbjct 105742 TGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAATT 105683 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| ||| | ||||| || | ||| ||||| | |||| || || || Sbjct 105682 TTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCA 105623 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||||||||| Sbjct 105622 GTCAATGTTTTAACGAAAATTTGCAT 105597 >seq6771 Length=7421 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | || || ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 324 ATGCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCG 265 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | |||||| || || | || | || ||||| || || Sbjct 264 GAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGA 205 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| ||||| || || ||||| |||| ||||| |||| || Sbjct 204 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCA 145 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | ||||| || || ||||||||||| || || ||||| Sbjct 144 ACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | ||| |||| || || ||||||||||||||||| || ||||| Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | ||||| || ||| | || | || || || ||||| ||| Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || ||||| || || ||||| ||| | || | |||| || || |||| || || Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCA-CGTTCTCTATAGTATCCGAAGCTTCAAC 371 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || | ||||| ||||| ||||||||||| || || ||||| Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 >seq9711 Length=151070 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| ||||||||| ||| | || |||| ||||| ||||| || || ||||| || Sbjct 103947 ATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTT 103888 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| ||||| ||| | ||||| |||| || || || | |||| Sbjct 103887 ATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAAT 103828 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || |||||||| |||||||| ||||| Sbjct 103827 GGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| ||||| ||||| || ||| | ||| || || Sbjct 104456 ACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCG 104397 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||| || ||| | |||| || |||||| || || |||||||| ||||| |||||| Sbjct 104396 AGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGA 104337 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| || | || | || | ||||| |||| |||||| || || || | ||||| Sbjct 104336 ATTTTCGCCTTCA-CGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTT 104278 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||| ||| || ||||| || ||||| Sbjct 104277 GCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || |||||||| |||| |||||| || ||||| || || || |||||||| Sbjct 104249 ATACCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATC- 104191 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || || | || ||||| ||| | ||||| | ||||| |||| Sbjct 104190 -TGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCG 104132 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || ||||| ||||| |||||||| ||||| || | || | ||||| || | Sbjct 104131 GTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGA-CGTTCTCGATCGTGTCTGACGCT 104073 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || | || || || || | ||||| || ||||||||||| Sbjct 104072 TCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 >seq10234 Length=192330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACT-GGAGCGTTTTAAAACA 124165 || || ||||||||||| | || ||| ||| || ||||||| | ||| || || | Sbjct 2078 CAATATGACATGTGGAACGTTAAACCAACAGATCTGTGGGATTGGGATGAATTGAAGAGG 2019 Query 124166 ACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAAC 124225 | | || ||| |||||| || | || ||||| || | || ||||| ||||| | Sbjct 2018 AAG-ATCGCGAAGCACGGAGTGAGGAATTCGCTTTTAATAGCACCTATGCCAACGGCCTC 1960 Query 124226 CACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGT 124285 || || || |||||||| || ||||||||| | || |||| ||| | |||| | ||||| Sbjct 1959 GACGGCACAGATTTTAGGGAATAACGAATCCATTGAACCGTACACGAGCAATATCTACGT 1900 Query 124286 GCGACGAGTGTTAGCCGGCGATTTT 124310 | | || || ||| | || || ||| Sbjct 1899 GAGGCGCGTATTATCTGGAGAGTTT 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451934631114560