Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq7345 100 7e-17 >seq7345 Length=15758 Score = 100 bits (110), Expect = 7e-17 Identities = 240/362 (66%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 29313 CGATGCGCCGTGGGTGCGGCAGGTGCAAAACACGCAGCTGTCGGCGGTCCGTATTCGCTT 29372 |||| |||| |||||||| | || || | ||||| || || || ||| | ||||| Sbjct 7562 CGATACGCCCTGGGTGCGCTCGCTGAGCAATATCCAGCTTTCCGCAGTGCGTCTGCGCTT 7621 Query 29373 CGGCCTGCCGGCGCTGCAAAAGAGCGATCCGGCGACCGGCGTGTTCGGC---TATCGCGT 29429 || | ||| ||||| || || || | | |||| ||||| || || | Sbjct 7622 CGCCTGGCCAGCGCTCCAGCAGCAGGACACC---AACGGCAACATCGGCGGGTACCGGAT 7678 Query 29430 GGAATATGCGATCGATCTGTCGGTCGACGGAGGCTCGTACGCACAGGTGCTGTCGTCGGC 29489 |||||||| | |||||| | |||||| ||| | || |||||||| ||| Sbjct 7679 CGAATATGCCGTAGATCTGGCCACCGACGGCGGCGCCTATCAGGAGGTGCTGCGCGAGGC 7738 Query 29490 CTTCGATGGCAAGACGACGTCGCTTTACGAGCGCTCGCACCGGATCGAGTTGCCGCGCGC 29549 | ||||||||||||| || | | |||||||| || | ||||||||| ||||| || Sbjct 7739 CGTCGATGGCAAGACCACCACCCGCTACGAGCGTTCCCGCCGGATCGACCTGCCGGCGGC 7798 Query 29550 CACAACCGGCTGGTTGGCCCGCGTGCGCCGCATCACGCCTAACGCACACAGCTCACTGAT 29609 ||| | |||||| || ||||| |||||| | ||||| ||| ||| | | || Sbjct 7799 CACCAATGGCTGGCAGGTGCGCGTCCGCCGCCTGACGCCGAACCAGAACAACAACCGCAT 7858 Query 29610 TGCGGACACGGTGAATATCGAAGCGATCACGGAGGTGATTGACCGCAAGCTGCGGTATCC 29669 || ||||| || |||| | ||| |||||||| ||| |||||||| || || Sbjct 7859 CGCCGACACCATGCTGATCGCCGGCTACACCGAGGTGATCGACGCGAAGCTGCGCTACCC 7918 Query 29670 GA 29671 || Sbjct 7919 GA 7920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127527218765856