Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 131 4e-25
seq7200 129 1e-24
seq9711 113 1e-19
seq10900 104 6e-17
>seq6771
Length=7421
Score = 131 bits (144), Expect = 4e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || | |||||| || || |||||||||| |||||| || | | ||||
Sbjct 543 CGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTC 484
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| |||||||| ||||| || || ||||| || |||||||| || ||||| ||||||
Sbjct 483 CTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCC 424
Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| ||||| || ||| |||| |||| || | || || | | ||| || || |
Sbjct 423 TCTTTGTCCTGGAT-TTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAG 365
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || ||||| ||||||||||| || || || ||
Sbjct 364 GGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTG 326
Score = 109 bits (120), Expect = 1e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||| || || || || || || ||||| |||| ||| ||||| | | |||
Sbjct 315 CGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTT 256
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|| |||||||| || || || || || || || ||||||||||| || ||| ||| |||
Sbjct 255 CTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCT 196
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || ||||| || || || | ||||||| | ||| || || |
Sbjct 195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGG 136
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || ||||| ||||||||||| || || || ||
Sbjct 135 GTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTG 98
>seq7200
Length=105881
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| |||||||| |||||||||| |||||||||| ||| || | ||| |||
Sbjct 104896 AGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCT 104837
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||| ||||| || ||||| | |||||||||||| || || |||||| |||
Sbjct 104836 TCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 104777
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
||||||||| |||||| |||| ||||| | | || || || | || || |||
Sbjct 104776 TGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTC 104717
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || ||||| ||||| ||
Sbjct 104716 TTTCCAGTCAACGTCTTCACGAAAATCTG 104688
Score = 111 bits (122), Expect = 4e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| || || ||||| | ||| || || | | || | || || || ||||||||||||
Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|||||||| | | |||||| ||||| |||||||| |||||||| ||| ||||
Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 105447
Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
||| |||| ||||||| | ||| || ||||| ||||| ||||| ||||| | ||
Sbjct 105446 GACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGT 105387
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||||||
Sbjct 105386 TTTAACAAAAATTTG 105372
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| || || ||||| | |||||| |||| | || | || || || || || || ||
Sbjct 105337 GTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCA 105278
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|| ||||| | | ||||| |||||| ||||||||| || ||||| ||||||||
Sbjct 105277 GCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAAT-TTTTGCTTT 105219
Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
||| ||||| ||||| | | || || ||||| ||||| || || || ||||||||
Sbjct 105218 GACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGT 105159
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||| ||
Sbjct 105158 TTTGACAAAAATCTG 105144
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| || || || || | |||||||||| | || | |||||||||||||| ||||||
Sbjct 105793 GTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCG 105734
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551
|| ||||| | | ||| || || ||| |||||||| |||||||| ||| || ||
Sbjct 105733 GCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 105675
Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|| ||||| ||||| | || || || ||||| || || ||||| || || | ||
Sbjct 105674 GACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGT 105615
Query 199612 TTTCACAAAAATTTG 199626
||| || ||||||||
Sbjct 105614 TTTAACGAAAATTTG 105600
>seq9711
Length=151070
Score = 113 bits (124), Expect = 1e-19
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| |||| || | || ||||| || || || || | ||| || || | | ||
Sbjct 104240 CGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTG 104181
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||||||||||||||| | | |||||| ||||| ||||||
Sbjct 104180 CGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCT 104121
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| |||||||| ||| || || ||| |||| ||||||| | ||| || |||||
Sbjct 104120 TCCTTATCCTGAAT-TTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAA 104062
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| ||||| | ||||| || ||||||||
Sbjct 104061 TGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTG 104023
Score = 105 bits (116), Expect = 2e-17
Identities = 142/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||||| || || || | ||||||||| | | || | ||||||||||| || |||||
Sbjct 103988 GTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCA 103929
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
|||||||| | | |||||| |||||| |||||||| || ||||| ||| ||||
Sbjct 103928 GCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAAT-TTTGGCTTT 103870
Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611
|| ||| | ||||| | | ||| || ||||| || || || || || ||||||||
Sbjct 103869 GACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGT 103810
Query 199612 TTTCACAAAAATTTG 199626
||| |||||||| ||
Sbjct 103809 TTTAACAAAAATCTG 103795
Score = 93.3 bits (102), Expect = 1e-13
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| ||||| || ||||||||||| || || || ||||| | |||||||| | ||||||
Sbjct 104469 TCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGT 104410
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||| || || || || || || ||||| || || | ||||| || ||| ||| ||
Sbjct 104409 TCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCC 104350
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| || ||||| || ||||||| |||| ||||| | | || || || |
Sbjct 104349 CTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAG 104290
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || | ||| || ||||| || ||
Sbjct 104289 TGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTG 104251
>seq10900
Length=227893
Score = 104 bits (114), Expect = 6e-17
Identities = 134/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501
||||| | |||||| || | | || | |||||| || || || || || |||||||||
Sbjct 197228 TTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGATG 197287
Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561
|| | |||||| ||||| ||||||||| ||||||||||| ||| ||| |||
Sbjct 197288 AGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCTCG 197347
Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
| ||| || | | || || || | ||||| |||||||||||||| || ||||| ||
Sbjct 197348 ATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 197407
Query 199622 ATTTG 199626
|| ||
Sbjct 197408 ATCTG 197412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178738286533112
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