Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6771 131 4e-25 seq7200 129 1e-24 seq9711 113 1e-19 seq10900 104 6e-17 >seq6771 Length=7421 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | |||||| || || |||||||||| |||||| || | | |||| Sbjct 543 CGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTC 484 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| ||||| || || ||||| || |||||||| || ||||| |||||| Sbjct 483 CTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCC 424 Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || ||| |||| |||| || | || || | | ||| || || | Sbjct 423 TCTTTGTCCTGGAT-TTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAG 365 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||||||||| || || || || Sbjct 364 GGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTG 326 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || || || || || || ||||| |||| ||| ||||| | | ||| Sbjct 315 CGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTT 256 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| || || || || || || || ||||||||||| || ||| ||| ||| Sbjct 255 CTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCT 196 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| || || || | ||||||| | ||| || || | Sbjct 195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGG 136 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||||||||| || || || || Sbjct 135 GTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTG 98 >seq7200 Length=105881 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||| |||||||||| |||||||||| ||| || | ||| ||| Sbjct 104896 AGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCT 104837 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||| || ||||| | |||||||||||| || || |||||| ||| Sbjct 104836 TCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC 104777 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| |||||| |||| ||||| | | || || || | || || ||| Sbjct 104776 TGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTC 104717 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| ||||| || Sbjct 104716 TTTCCAGTCAACGTCTTCACGAAAATCTG 104688 Score = 111 bits (122), Expect = 4e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||| | ||| || || | | || | || || || |||||||||||| Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | |||||| ||||| |||||||| |||||||| ||| |||| Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 105447 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| |||| ||||||| | ||| || ||||| ||||| ||||| ||||| | || Sbjct 105446 GACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGT 105387 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 105386 TTTAACAAAAATTTG 105372 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || ||||| | |||||| |||| | || | || || || || || || || Sbjct 105337 GTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCA 105278 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | | ||||| |||||| ||||||||| || ||||| |||||||| Sbjct 105277 GCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAAT-TTTTGCTTT 105219 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||||| ||||| | | || || ||||| ||||| || || || |||||||| Sbjct 105218 GACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGT 105159 Query 199612 TTTCACAAAAATTTG 199626 ||| |||||||| || Sbjct 105158 TTTGACAAAAATCTG 105144 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || || || || | |||||||||| | || | |||||||||||||| |||||| Sbjct 105793 GTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCG 105734 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || ||||| | | ||| || || ||| |||||||| |||||||| ||| || || Sbjct 105733 GCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 105675 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||||| ||||| | || || || ||||| || || ||||| || || | || Sbjct 105674 GACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGT 105615 Query 199612 TTTCACAAAAATTTG 199626 ||| || |||||||| Sbjct 105614 TTTAACGAAAATTTG 105600 >seq9711 Length=151070 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| || | || ||||| || || || || | ||| || || | | || Sbjct 104240 CGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTG 104181 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||||||||||||||| | | |||||| ||||| |||||| Sbjct 104180 CGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCT 104121 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| ||| || || ||| |||| ||||||| | ||| || ||||| Sbjct 104120 TCCTTATCCTGAAT-TTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAA 104062 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | ||||| || |||||||| Sbjct 104061 TGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTG 104023 Score = 105 bits (116), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| || || || | ||||||||| | | || | ||||||||||| || ||||| Sbjct 103988 GTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCA 103929 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | |||||| |||||| |||||||| || ||||| ||| |||| Sbjct 103928 GCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAAT-TTTGGCTTT 103870 Query 199553 -ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | | ||| || ||||| || || || || || |||||||| Sbjct 103869 GACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGT 103810 Query 199612 TTTCACAAAAATTTG 199626 ||| |||||||| || Sbjct 103809 TTTAACAAAAATCTG 103795 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||| || ||||||||||| || || || ||||| | |||||||| | |||||| Sbjct 104469 TCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGT 104410 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| || || || || || || ||||| || || | ||||| || ||| ||| || Sbjct 104409 TCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCC 104350 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| || ||||||| |||| ||||| | | || || || | Sbjct 104349 CTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAG 104290 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||| || ||||| || || Sbjct 104289 TGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTG 104251 >seq10900 Length=227893 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||| | |||||| || | | || | |||||| || || || || || ||||||||| Sbjct 197228 TTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGATG 197287 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || | |||||| ||||| ||||||||| ||||||||||| ||| ||| ||| Sbjct 197288 AGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCTCG 197347 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | ||| || | | || || || | ||||| |||||||||||||| || ||||| || Sbjct 197348 ATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAG 197407 Query 199622 ATTTG 199626 || || Sbjct 197408 ATCTG 197412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178738286533112