Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 109 6e-19
>seq7200
Length=105881
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
||||| | || | |||||| || || ||||| || || || || || || |||||
Sbjct 105586 AAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGG 105527
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
|||| || |||||||| |||||||| ||||| | |||||| || | || | | |||
Sbjct 105526 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 105467
Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555
|| ||| || || |||| || | | |||||| || ||| || |||| |||
Sbjct 105466 TTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTG 105407
Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || ||||||| ||||||||||| ||||||||
Sbjct 105406 ATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 89.7 bits (98), Expect = 6e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
||||| | |||| |||||| || |||||||| ||||| || || || ||||| ||
Sbjct 105130 AAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGA 105071
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
| || || || ||||| || || || ||||| | |||||| || | || | || ||
Sbjct 105070 CCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCT 105011
Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555
|| || || ||| |||| || | | ||| || | || || |||| |||
Sbjct 105010 TTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTG 104951
Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
||||| || || ||||| ||||||||||| || ||||||
Sbjct 104950 ATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||||||||||||||| || | || || |||| || ||||| || || || ||
Sbjct 104875 TCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAG 104816
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521
||||| ||||||||||| | || | || || |||||| ||||| | ||| || |
Sbjct 104815 ATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTT-TGCTTTCACGTT 104757
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | || || || | || ||||| || || |||| ||| || ||
Sbjct 104756 CTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCAC 104697
Query 46582 AAAGATTTGCAT 46593
|| || |||||
Sbjct 104696 GAAAATCTGCAT 104685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565152653334720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |