Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7200 109 6e-19 >seq7200 Length=105881 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | || | |||||| || || ||||| || || || || || || ||||| Sbjct 105586 AAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGG 105527 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || |||||||| |||||||| ||||| | |||||| || | || | | ||| Sbjct 105526 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 105467 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || ||| || || |||| || | | |||||| || ||| || |||| ||| Sbjct 105466 TTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTG 105407 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || ||||||| ||||||||||| |||||||| Sbjct 105406 ATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | |||| |||||| || |||||||| ||||| || || || ||||| || Sbjct 105130 AAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGA 105071 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || || ||||| || || || ||||| | |||||| || | || | || || Sbjct 105070 CCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCT 105011 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || || || ||| |||| || | | ||| || | || || |||| ||| Sbjct 105010 TTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTG 104951 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| || || ||||| ||||||||||| || |||||| Sbjct 104950 ATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||||||||||||||| || | || || |||| || ||||| || || || || Sbjct 104875 TCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAG 104816 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 ||||| ||||||||||| | || | || || |||||| ||||| | ||| || | Sbjct 104815 ATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTT-TGCTTTCACGTT 104757 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || || | || ||||| || || |||| ||| || || Sbjct 104756 CTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCAC 104697 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 104696 GAAAATCTGCAT 104685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565152653334720