Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 134 1e-26
seq7200 113 5e-20
seq9711 104 2e-17
seq10678 102 8e-17
>seq6771
Length=7421
Score = 134 bits (148), Expect = 1e-26
Identities = 161/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||||||||| ||||| || ||||| |||||| | || || || || |
Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| | |||| ||||||| |||||||||||||||||| | || ||
Sbjct 383 GATACTATAGAGAACG-TGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 441
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| || |||| ||| ||||||||||| || || | | || || || |||||
Sbjct 442 ACAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAA 501
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||||||| | || || || || || ||||
Sbjct 502 CATCCAAAAGGAATCAACACTCCACTTAGTTTTGCG 537
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||||||||| ||||| || ||||| |||||| |||| || || || |
Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| || |||| |||||||| || ||||| | || ||
Sbjct 155 GACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 214
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || |||||||| || || || | | || || |||||| |||
Sbjct 215 CAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAAC 274
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||| | ||||| ||| |||| ||||||
Sbjct 275 ATCCAGAAGGAATCTACGCTTCATCTGGTTCTGCGT 310
>seq7200
Length=105881
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || ||||| ||||| || ||||||||||| | || |||||||| |
Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199
Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | ||||| | |||| |||||| | || || || |||||||| | || |
Sbjct 105200 GGACACGATCGAAAACG-TCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATC 105258
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || | | || | || |||||||| || || |||| ||||| || || ||||
Sbjct 105259 AGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACA 105318
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||| ||||| ||| | ||| ||||||| || || || ||| | || ||
Sbjct 105319 ACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||| | || || || ||||| || | || || ||||| |
Sbjct 104685 ATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCT 104744
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | |||| ||| || | |||||||| || || || | |||||
Sbjct 104745 GACACTATCGAGAACG-TGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCTGACCA 104803
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | || || |||||||| || |||| || ||| | ||||||||
Sbjct 104804 GCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTACAA 104863
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||||||||| |||| || || ||||| || || || | |||||
Sbjct 104864 TATCCAAAAGGAATCGACTCTTCACTTGGTTCTTCGATTACGTGGCGG 104911
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| ||||| | || || || ||||| || | || || ||||| |
Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| | |||| ||||| | || || || ||||| || | || |||
Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || || ||||||||||| || | || || || ||||||||
Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTACAAT 105776
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || ||| | || |||||||||| || |||||| | || ||
Sbjct 105777 ATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 105823
>seq9711
Length=151070
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| ||||| ||||||||||| || | || || || || |
Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| | |||| ||||| | || || || ||||| || | || ||
Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| | | || | ||| || ||||| ||||| || | || || || ||||||||||
Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAAC 103971
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || ||| |||| |||||||||| || |||||| | || ||
Sbjct 103972 ATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 104018
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| ||||| || || || | || |||||||| || || | || |||||||| |
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | ||||| | ||||||||||| ||||| |||| ||
Sbjct 104308 GACACAATCGAGAACG-TGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCA 104366
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|| | || |||| ||| |||||||| || || |||| || || | |||||||||
Sbjct 104367 GCAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAA 104426
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| ||||| ||| | || || || | || || || | ||||| ||
Sbjct 104427 TATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGG 104474
>seq10678
Length=68604
Score = 102 bits (112), Expect = 8e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
|| |||| || |||||||||||||| ||||| | || ||||||| || ||||||||
Sbjct 45929 TCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTTTC 45870
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037
||||||||||| || || |||||||| ||||| | |||||||| |||||||| ||
Sbjct 45869 AGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATGC 45811
Score = 86.0 bits (94), Expect = 6e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
|| || || ||||| ||||||||||| || || | ||||| ||||| ||||| |||
Sbjct 45490 TAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATATTCTCTATGGCCATTTGGAAG 45431
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
||||| || || || || || | || | ||| || ||| ||| | || | ||||||
Sbjct 45430 CCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAATCAGATTC 45371
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCA 133324
||||| || || || || ||||||||||| ||||
Sbjct 45370 TCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500096923786240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |