Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq11428 199 3e-45 seq10579 113 3e-19 >seq11428 Length=72031 Score = 199 bits (220), Expect = 3e-45 Identities = 676/1043 (65%), Gaps = 10/1043 (1%) Strand=Plus/Plus Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334 |||| |||||||| | ||| || |||||||||||||| || |||||||| | || || | Sbjct 19448 TACCGTTGGCATCGATATCGAAGGTGACTTCAATTTGCGGTACCCCTCTAGGCGCCGGAG 19507 Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394 | || || ||| | ||| | || ||| |||| ||||| || || | || || | Sbjct 19508 GTATACCAGTCAACTCGAATTTGCCGAGAATATTGTTATCCTTCGTCATCGCTCTCTCTC 19567 Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454 ||||| | | ||| ||| ||| | | |||||| || ||||| |||||||| ||||| Sbjct 19568 CCTCGTAGACTTGAATAAGTACTCCCGGTTGATTGTCGGAATACGTTGTAAA-CGTCTGG 19626 Query 517455 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 | | ||| || || || || || || | || | ||||||| | ||||| || Sbjct 19627 GTCTGTTTCGTTGGTATCGTCGTATTCCTCTTGATCAAGGTGGTCATGACGCCACCAGCG 19686 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | ||| | || | || || || || | || | | || ||| | ||| Sbjct 19687 GTCTCAATACCCAATGACAACGGTGTCACGTCCAGCAGAAGTAAATCTTGGACCGCTTCG 19746 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | | |||| | ||| || || |||| || || || || |||||||| ||||| Sbjct 19747 GATTTGTCACCATGTAAAATCGCCGCCTGAACTGCCGCGCCGTAGGCAACAGCCTCATCC 19806 Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 517693 ||||||| || || |||| || || |||||||| |||| | ||| || | | | | Sbjct 19807 GGATTAATAGATTTGTTTAATTCCTTGCCATTGAAGAAATCTTGAAGTAGCTTTTGAATC 19866 Query 517694 TTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGT 517753 || || || | | || || || |||| || || || ||||||| || |||| Sbjct 19867 TTTGGTATCCTGGTCGAGCCACCGACTAGAACGATACTGTGAACCTGTGCCTTGTCCATC 19926 Query 517754 TTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAA 517813 || | || | | || || ||||||||||| |||||||| || | |||| Sbjct 19927 TTCGCGTCTCTAAGCGCCTTCTCCACGGGTTCAAGGGTGCTTCTAAACAGATCCGCACAA 19986 Query 517814 AGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAACAAAG 517871 || || ||||| | || || ||| | |||| | || |||| || || |||||||| | Sbjct 19987 AGCTCCTCGAACCTGGCCCTGGTA--ATTGACGTGTAGAAATCTATACCCTCGAACAACG 20044 Query 517872 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 517931 |||| | || || | | || ||||| || || | | || || | ||||| | Sbjct 20045 AATCGATCTCGATGCTCGCCTGCGTCGACGAGCTCAGCGTTCTCTTCGCTCTCTCACAGG 20104 Query 517932 CTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCT 517989 | ||||| | | || || || || ||| || | ||||| || |||| || || || Sbjct 20105 CGGTCCTCAAGCGTCTTAGAGCTCTCTTGTTGGT--ATTCAGTTCCTTTTTGTACTTCCT 20162 Query 517990 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 518049 |||||| || | || | | || | ||||| ||||| || ||||| || | | Sbjct 20163 CTTGAACTCCTGCACGAAGTGGTTCACCATTCGATTGTCAAAGTCCTCACCGCCGAGATG 20222 Query 518050 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTAC 518109 || | || | ||||| | | || | || | || || || | | || | | || Sbjct 20223 CGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCCTCGATCGTCAGGATCGACAC 20282 Query 518110 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTT 518169 || ||| ||||| || | || || || || |||||| | || | || || Sbjct 20283 GTCGAAGGTACCACCGCCTAAGTCGAAGATCAGAACATTCTTCTCACCCGCAGCTTTCTT 20342 Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 |||||||||||||| | || || || || || || || || || || | ||||| || Sbjct 20343 GTCAAGACCATACGCTATCGCGGCGGCCGTGGGCTCGTTTATTATCCTGAGGACATTCAG 20402 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 ||||||||| || ||||||||||| || || || || || || || || || || || Sbjct 20403 ACCAGCAATAGCGCCGGCATCTTTAGTTGCCTGCCTCTGAGAGTCATTGAAGTAAGCCGG 20462 Query 518290 AACAGTAATAACGGCATCAGTTA 518312 || || || || || | |||| Sbjct 20463 TACTGTGATGACTGCGTTCGTTA 20485 >seq10579 Length=342791 Score = 113 bits (124), Expect = 3e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | ||||| | || || |||| ||||| || |||||||| ||||| | Sbjct 109949 TTTATCTTCCTGCTTATCCATGCCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTAC 110008 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | ||||| | ||||||||| || |||||||| || ||||||| ||||||||| Sbjct 110009 ACGAAGCACATTTAATCCAGCAATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATC 110068 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 ||||||||||| || ||||||||||| |||| ||||| Sbjct 110069 ATTAAAATATGCTGGCACAGTAATAACAGCATTTTTTACT 110108 Score = 111 bits (122), Expect = 1e-18 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 ||||| ||||| || ||||| |||||||| ||||||| ||| |||| ||| || ||| Sbjct 109971 CCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACACGAAGCACATTTAATCCAGCA 110030 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 |||| | ||| ||| || ||||||| |||| ||||||||||||||||| |||||| Sbjct 110031 ATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATCATTAAAATATGCTGGCACAGTA 110090 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 110091 ATAACAGCATTTTT 110104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780220171704016