Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq11428 199 3e-45
seq10579 113 3e-19
>seq11428
Length=72031
Score = 199 bits (220), Expect = 3e-45
Identities = 676/1043 (65%), Gaps = 10/1043 (1%)
Strand=Plus/Plus
Query 517275 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 517334
|||| |||||||| | ||| || |||||||||||||| || |||||||| | || || |
Sbjct 19448 TACCGTTGGCATCGATATCGAAGGTGACTTCAATTTGCGGTACCCCTCTAGGCGCCGGAG 19507
Query 517335 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 517394
| || || ||| | ||| | || ||| |||| ||||| || || | || || |
Sbjct 19508 GTATACCAGTCAACTCGAATTTGCCGAGAATATTGTTATCCTTCGTCATCGCTCTCTCTC 19567
Query 517395 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 517454
||||| | | ||| ||| ||| | | |||||| || ||||| |||||||| |||||
Sbjct 19568 CCTCGTAGACTTGAATAAGTACTCCCGGTTGATTGTCGGAATACGTTGTAAA-CGTCTGG 19626
Query 517455 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
| | ||| || || || || || || | || | ||||||| | ||||| ||
Sbjct 19627 GTCTGTTTCGTTGGTATCGTCGTATTCCTCTTGATCAAGGTGGTCATGACGCCACCAGCG 19686
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573
|| || | ||| | || | || || || || | || | | || ||| | |||
Sbjct 19687 GTCTCAATACCCAATGACAACGGTGTCACGTCCAGCAGAAGTAAATCTTGGACCGCTTCG 19746
Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633
| | |||| | ||| || || |||| || || || || |||||||| |||||
Sbjct 19747 GATTTGTCACCATGTAAAATCGCCGCCTGAACTGCCGCGCCGTAGGCAACAGCCTCATCC 19806
Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 517693
||||||| || || |||| || || |||||||| |||| | ||| || | | | |
Sbjct 19807 GGATTAATAGATTTGTTTAATTCCTTGCCATTGAAGAAATCTTGAAGTAGCTTTTGAATC 19866
Query 517694 TTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGT 517753
|| || || | | || || || |||| || || || ||||||| || ||||
Sbjct 19867 TTTGGTATCCTGGTCGAGCCACCGACTAGAACGATACTGTGAACCTGTGCCTTGTCCATC 19926
Query 517754 TTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAA 517813
|| | || | | || || ||||||||||| |||||||| || | ||||
Sbjct 19927 TTCGCGTCTCTAAGCGCCTTCTCCACGGGTTCAAGGGTGCTTCTAAACAGATCCGCACAA 19986
Query 517814 AGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAACAAAG 517871
|| || ||||| | || || ||| | |||| | || |||| || || |||||||| |
Sbjct 19987 AGCTCCTCGAACCTGGCCCTGGTA--ATTGACGTGTAGAAATCTATACCCTCGAACAACG 20044
Query 517872 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 517931
|||| | || || | | || ||||| || || | | || || | ||||| |
Sbjct 20045 AATCGATCTCGATGCTCGCCTGCGTCGACGAGCTCAGCGTTCTCTTCGCTCTCTCACAGG 20104
Query 517932 CTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCT 517989
| ||||| | | || || || || ||| || | ||||| || |||| || || ||
Sbjct 20105 CGGTCCTCAAGCGTCTTAGAGCTCTCTTGTTGGT--ATTCAGTTCCTTTTTGTACTTCCT 20162
Query 517990 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 518049
|||||| || | || | | || | ||||| ||||| || ||||| || | |
Sbjct 20163 CTTGAACTCCTGCACGAAGTGGTTCACCATTCGATTGTCAAAGTCCTCACCGCCGAGATG 20222
Query 518050 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTAC 518109
|| | || | ||||| | | || | || | || || || | | || | | ||
Sbjct 20223 CGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCCTCGATCGTCAGGATCGACAC 20282
Query 518110 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTT 518169
|| ||| ||||| || | || || || || |||||| | || | || ||
Sbjct 20283 GTCGAAGGTACCACCGCCTAAGTCGAAGATCAGAACATTCTTCTCACCCGCAGCTTTCTT 20342
Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229
|||||||||||||| | || || || || || || || || || || | ||||| ||
Sbjct 20343 GTCAAGACCATACGCTATCGCGGCGGCCGTGGGCTCGTTTATTATCCTGAGGACATTCAG 20402
Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289
||||||||| || ||||||||||| || || || || || || || || || || ||
Sbjct 20403 ACCAGCAATAGCGCCGGCATCTTTAGTTGCCTGCCTCTGAGAGTCATTGAAGTAAGCCGG 20462
Query 518290 AACAGTAATAACGGCATCAGTTA 518312
|| || || || || | ||||
Sbjct 20463 TACTGTGATGACTGCGTTCGTTA 20485
>seq10579
Length=342791
Score = 113 bits (124), Expect = 3e-19
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214
||| |||| | ||||| | || || |||| ||||| || |||||||| ||||| |
Sbjct 109949 TTTATCTTCCTGCTTATCCATGCCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTAC 110008
Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274
| | ||||| | ||||||||| || |||||||| || ||||||| |||||||||
Sbjct 110009 ACGAAGCACATTTAATCCAGCAATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATC 110068
Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314
||||||||||| || ||||||||||| |||| |||||
Sbjct 110069 ATTAAAATATGCTGGCACAGTAATAACAGCATTTTTTACT 110108
Score = 111 bits (122), Expect = 1e-18
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303
||||| ||||| || ||||| |||||||| ||||||| ||| |||| ||| || |||
Sbjct 109971 CCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACACGAAGCACATTTAATCCAGCA 110030
Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363
|||| | ||| ||| || ||||||| |||| ||||||||||||||||| ||||||
Sbjct 110031 ATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATCATTAAAATATGCTGGCACAGTA 110090
Query 322364 ATAACTGCTTTATT 322377
||||| || || ||
Sbjct 110091 ATAACAGCATTTTT 110104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780220171704016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |