Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq11428 257 2e-63 seq11025 246 4e-60 seq10579 87.8 2e-12 seq9746 87.8 2e-12 seq6787 84.2 3e-11 >seq11428 Length=72031 Score = 257 bits (284), Expect = 2e-63 Identities = 732/1115 (66%), Gaps = 20/1115 (2%) Strand=Plus/Plus Query 6705 TACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC--GGTGCGGC 6762 |||| || ||||| | |||||| | || | |||||| ||| ||||||| || || | Sbjct 19448 TACCGTTGGCATCGATATCGAAGGTGACTTCAATTTGCGGT--ACCCCTCTAGGCGCCGG 19505 Query 6763 TGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTC 6822 || ||||| || || || ||| | || || | | |||||||| ||| | || | || Sbjct 19506 AGGTATACCAGTCAACTCGAATTTGCCGAGAATATTGTTATCCTTCGTCATCGCTCTCTC 19565 Query 6823 ACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTG 6882 || || ||||||| ||| || | |||||||| || ||||| || | || Sbjct 19566 TCCCTCGTAGACTTGAATAAGTACTCCCGGTTGATTGTCGGAATACGTTGTAAACGTCTG 19625 Query 6883 T-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCA 6941 ||| | || | ||| ||||||||||| ||| || | | |||||| | ||||| Sbjct 19626 GGTCTGT-TTCGTTGGTATCGTCGTATTCCTCTTGATCAAGGTGGTCATGACGCCACCAG 19684 Query 6942 TAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATT 7001 || || | || | |||| ||||||||||||| || | | ||||| || | || Sbjct 19685 CGGTCTCAATACCCAATGACAACGGTGTCACGTCCAGCAGAAGTAAATCTTGGACCGCTT 19744 Query 7002 CGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 || ||||| ||| || || || || || | ||| ||||| || || ||||||| Sbjct 19745 CGGATTTGTCACCATGTAAAATCGCCGCCTGAACTGCCGCGCCGTAGGCAACAGCCTCAT 19804 Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAA 7121 | || ||||| | ||| || | ||| || || || || |||| | | | ||||| Sbjct 19805 CCGGATTAATAGATTTGTTTAATTCCTTGCCATTGAAGAAATCTTGAAGTAGCTTTTGAA 19864 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA 7181 | || || || | ||||| |||||||| | |||||| | || | | || || | Sbjct 19865 TCTTTGGTATCCTGGTCGAGCCACCGACTAGAACGATACTGTGAACCTGTGCCTTGTCCA 19924 Query 7182 TCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCA 7238 |||| | ||||| ||| | || || || ||||| | | | | || |||| ||| Sbjct 19925 TCTTCGCGTCTCTAAGCGCCTTCTCCACGGGTTCAAGGGTGCTTCTA---AACAGATCCG 19981 Query 7239 TACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATA 7298 ||| || ||||| || | || | |||||| || || |||||||| | || ||| | | Sbjct 19982 CACAAAGCTCCTCGAACCTGGCCCTGGTAATTGACGTGTAGAAATCTATACCCTCGAACA 20041 Query 7299 ACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 ||||||| || || ||| | | || | || ||| | ||||| ||| || | ||||| Sbjct 20042 ACGAATCGATCTCGATGCTCGCCTGCGTCGACGAGCTCAGCGTTCTCTTCGCTCTCTCAC 20101 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA---ATATCTTTCTTATGTT 7415 | || || | || || | || || | | ||| || | | || || || | | Sbjct 20102 AGGCGGTCCTCAAGCGTCTTAGAGCTCTCTTGTT---GGTATTCAGTTCCTTTTTGTACT 20158 Query 7416 TACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCA 7475 | | || ||||| | |||||| | | || || || || ||||| || | Sbjct 20159 TCCTCTTGAACTCCTGCACGAAGTGGTTCACCATTCGATTGTCAAAGTCCTCACCGCCGA 20218 Query 7476 AGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACG 7535 || || || || || || | ||| || |||||||| || | || || | | | || Sbjct 20219 GATGCGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCCTCGATCGTCAGGATCG 20278 Query 7536 AAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGT 7595 | || || || |||||||| || | ||| || || || || ||| | || | | | Sbjct 20279 ACACGTCGAAGGTACCACCGCCTAAGTCGAAGATCAGAACATTCTTCTCACCCGCAGCTT 20338 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAG 7654 |||| || ||||| ||||| || || || ||||| || || || || || | || |||| Sbjct 20339 TCTTGTCAAGACCATACGCTATCGCGGCGGCCGTGGGCTCGTTTATTATCCTGAGGACA- 20397 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 ||||| |||||||||| | |||||||| || || || | || || || || ||||| Sbjct 20398 TTCAGACCAGCAATAGCGCCGGCATCTTTAGTTGCCTGCCTCTGAGAGTCATTGAAGTAA 20457 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || | ||| |||| ||| | |||| || || || | ||||| | || Sbjct 20458 GCCGGTACTGTGATGACTGCGTTCGTTATAGTCTTGCCCAGGTAAGCCTCCGCCGTCTCC 20517 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| || || || ||||| || || | ||| || Sbjct 20518 TTCATCTTCGTTAGGACCATGGAAGATACCTCCTC 20552 >seq11025 Length=145197 Score = 246 bits (272), Expect = 4e-60 Identities = 795/1224 (65%), Gaps = 20/1224 (2%) Strand=Plus/Plus Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 || || ||||| || | |||||| | |||||||| || || | | ||||| ||| Sbjct 17273 TATTTCTCCGCCTCGTTCACCATCCTCTCAATGTCCTCCTTGCTGAGCCGACCCTTGTCA 17332 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 || || || || ||||| | || || | || ||| || | ||| || || | Sbjct 17333 TTGGTGATTGTGATCTTGTTCTCCTTGCCAGTGGACTTGTCCACGGCAGAGACGTTAAGG 17392 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCG--G 6761 || || || ||||| | ||||| | || | ||| || || || || ||| ||| | Sbjct 17393 ATGCCGTTCGCATCGATGTCGAATGTAACCTCAATCTGAGGG--ACTCCGCGGGGCGCTG 17450 Query 6762 CTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTT 6821 |||||||| | | || ||| | || || | | | || ||| | | | | || | Sbjct 17451 GGGGAATACCGCTAAGCTCGAATTTGCCCAGCAGATTATTGTCCTTGGTCATGGCGCGCT 17510 Query 6822 CACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTT 6881 | || || || || | ||| ||| | || ||||| || |||| |||| | | Sbjct 17511 CGCCCTCGTACACCTGAATCAACACACCGGGCTGATTGTCGGCGTAGGTTGTGAAGGTCT 17570 Query 6882 GT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCC 6940 | ||| | || | || || || || || || ||| | || |||||| | ||| || Sbjct 17571 GAGTCTGTTTT-GTCGGGATGGTAGTGTTCCTTTTAATGAGCGCGGTCATGACACCGCCG 17629 Query 6941 ATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGAT 7000 || |||| || ||||| || || || ||||| | || | || ||| || || Sbjct 17630 GCTGTCTCGATACCCAGAGAGAGCGGAGTGACGTCAAGCAGAAGCAAGTCCTGCACTTCC 17689 Query 7001 TCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCA 7060 ||| | || || | ||| || || || || | || |||||||| || || || Sbjct 17690 TCGGACTTGTCGCCATGCAGGATAGCCGCCTGTACGGCAGCGCCGTATGCCACGGCTTCG 17749 Query 7061 TCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGA 7120 ||||| || || | || || || ||||| ||||| || | ||| | | | ||| Sbjct 17750 TCGGGATTGATAGACTTGTTGAGCTCTTTGCCGTTGAAGAAGTCCTGCAGGAGCTTCTGA 17809 Query 7121 ATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCG 7180 || || || ||||| || || || || || | |||||| || | | | | || || Sbjct 17810 ATCTTGGGAATTCGCGTGGAGCCGCCAACTAGAACGATATCGTGAATCTGAGCCTTGTCC 17869 Query 7181 ATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATA 7240 ||||| | ||| || || | || ||||| ||||| | | ||||| | || Sbjct 17870 ATCTTGGCGTCGCGCAGCGACTTCTCGACGGGTTCGAGAGTACCGCGGAAGAGATCGGCG 17929 Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 || || ||||| ||||| || || || || || || || || || | || ||||| ||| Sbjct 17930 CAGAGCTCCTCGAAACGAGCTCGCGTGATAGAGGTGTAAAAGTCGATTCCCTCGTACAAC 17989 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || ||||| ||| | | || | | || || | || ||||| |||||||| || Sbjct 17990 GAGTCGATTTCGATGCTGGCCTGAGTGGAGGATGACAGGGTCCGCTTCGCGCGCTCGCAG 18049 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 ||||| |||| ||| || ||||| || ||| || | ||| ||||| | || || Sbjct 18050 GCCGTGCGTAGACGGCGGAGGGCGCGTTTGTTCGTGGTCAGATCCTTCTTGTACTTGCGC 18109 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCT-CGAAT--CGAAATCTTCACCACCCAAG 7477 || ||||| | |||||| | || | ||| | |||| || || ||||||| Sbjct 18110 TTGAACTCCTGCACGAAGTG---ATTGACCATGCGATTGTCGAAGTCCTCGCCACCCAGA 18166 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 ||||| || ||||| || | |||||| || |||||||| |||| || | | | || Sbjct 18167 TGTGTGTCACCCGCTGTGGATTTGACCTCGAAGATACCATCTTCGATCGTCAGGATGGAC 18226 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTG-- 7594 || || || || |||||||| || || || ||||| ||||| ||| ||| | || Sbjct 18227 ACGTCGAAAGTGCCACCACCGAGATCGAAGATGAGGACGTT----TCGCTCGCCGGTGGC 18282 Query 7595 -TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 || || ||||||||||| ||||| || || || || || ||||| || ||||| || Sbjct 18283 CTTTTTGTCGAGACCGTAGGCGATCGCGGCAGCAGTGGGCTCATTGATGATACGCAGTAC 18342 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||| ||| | || || | || || || || || || || ||||| ||||| ||||| Sbjct 18343 GTTCAAGCCCGAGATGGTGCCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTA 18402 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || | || || | ||||| | || || | |||| ||||| | || Sbjct 18403 AGCAGGGACGGTGATCACAGCATTGGTGACGGTTTTGCCTAAGTACGCCTCCGCAGTCTC 18462 Query 7774 TTTCATTTTGGTAAGAACCATCGA 7797 ||||| || || |||||||| Sbjct 18463 CTTCATCTTTACTAGGACCATCGA 18486 Score = 113 bits (124), Expect = 6e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 |||| ||||| |||||||||||||| |||||||| || ||||||||||| ||||| Sbjct 19789 AAAATGGTGTTGTTGGGGTTCATGGCGACCTGGTTCTTAGCGGCGTCCCCGATGAGACGC 19848 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | |||||||| || || || |||||||| || || || |||||||| || Sbjct 19849 TC---GGTCTCCGTAAAGGCCACATAGCTCGGGGTCGTGCGGTTACCCTGGTCGTTGGCG 19905 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || || || || | ||| || |||| |||||||| || || || || || | ||| Sbjct 19906 ATGATCTCGACCTTGCCGTGCTGGAAGACACCGACGCAGGAGTAAGTCGTGCCAAGATCG 19965 Query 8138 ATACCGATTGC 8148 |||||||| || Sbjct 19966 ATACCGATCGC 19976 >seq10579 Length=342791 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 7589 TCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGA 7648 |||| | |||||| | ||||| || | || || || |||||||| ||||| | |||| Sbjct 109953 TCTTCCTGCTTATCCATGCCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACACGA 110012 Query 7649 AG-ACAGTTCAGGCCAGCAATAGTTGCC--GCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 || ||| || | |||||||| ||| | |||||||| |||||||||||||| ||||| Sbjct 110013 AGCACATTTAAT-CCAGCAAT--TTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATCA 110069 Query 7706 TTAAAGTAGGCCGGGACCGT 7725 ||||| || || || || || Sbjct 110070 TTAAAATATGCTGGCACAGT 110089 >seq9746 Length=45217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||||||||| |||||||| || || || || || ||| || || | ||| Sbjct 28006 ATCAAAATCTTCACCTCCCAAGTGGGTGTCACCATTAGTGGCGACGACCTCGAACACACC 27947 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | ||| || ||||| || |||||||||||||| || | || || Sbjct 27946 GTTGTCGATGGTGAGCAAGCTCACGTCAAAAGTGCCACCACCCAGGTCGAACACCAGCAC 27887 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| | ||| || || || | |||||||||||| || || || ||||| || Sbjct 27886 GTTTTTCTCGCCATCT---TTTTTGTCCAAACCGTACGCGATCGCGGCAGCAGTTGGCTC 27830 Query 7636 ATTAATAAT 7644 || ||||| Sbjct 27829 GTTGATAAT 27821 >seq6787 Length=35519 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 22431 AAAAACGTGTAAA-TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAA 22489 ||||| |||||| |||||||| ||||| ||||| || || || || ||||||| ||| Sbjct 15454 AAAAATCTGTAAAATTTTATCATGCATCAACATCTGAACTTTATGGCAAAGTAATGGAAG 15395 Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGG 22535 ||||||| ||||| || || ||||| || ||||| |||||||| Sbjct 15394 TCCCACAAACCGAAAAAACTCCATTTTATCCACGTTCTCCATATGG 15349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635036450354240