Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq10234 102 1e-16
>seq10234
Length=192330
Score = 102 bits (112), Expect = 1e-16
Identities = 205/302 (68%), Gaps = 4/302 (1%)
Strand=Plus/Minus
Query 112274 TGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAA 112333
||| |||| || ||||||| || ||| |||||||| ||||| ||||||||||| ||
Sbjct 2808 TGTATGGATCGCCATTCTCAGATCCCAAGTAGAGACTGGAACACCTTATATGCTTTATAA 2749
Query 112334 AGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCT 112393
||| ||||| | ||| ||||| || || | || ||||| || ||| ||
Sbjct 2748 AGATCAATGTAATCGAAAATCGAATCACCAGCATATAGGCACTATCAAATGTAGCAATCT 2689
Query 112394 CTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG--GCTGTGTGTAACCTCGCA 112451
||||| ||||| | |||| | | | | |||| | |||||||| || | |||
Sbjct 2688 GTGTACTGAAATTGTTGAATATTCTGGTCCTG--GAGAAGTTGCTGTGTGCAATTTAGCA 2631
Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 112511
|| || ||| || || || ||| || |||| || ||||| ||||||| ||| |||||
Sbjct 2630 TCTATTGCTGTCAACATGTTTGTTAATACAGATACCAAGACTTTTGATTTTGATAAACTT 2571
Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571
| ||| | |||| |||||| || ||| | | ||| ||||| ||||||||
Sbjct 2570 AAAACAGTCGCAAAAATTGTCACCCGCAATCTAGATAAAGTCATTGACGTTAATTTTTAT 2511
Query 112572 CC 112573
||
Sbjct 2510 CC 2509
Score = 89.7 bits (98), Expect = 6e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961
||||| || ||||| |||||||| ||||| || ||||| || || || ||||| |||| |
Sbjct 1988 CTTTTAATAGCACCTATGCCAACGGCCTCGACGGCACAGATTTTAGGGAATAACGAATCC 1929
Query 112962 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 113021
||||||| ||||||| || ||||| |||| | | | ||||||||||| ||
Sbjct 1928 ATTGAACCGTACACGAGCAATATCTACGTGAGGCGCGTATTATCTGGAGAGTTTGTCATC 1869
Query 113022 GTCAACAAGCATCT 113035
||||| ||||||
Sbjct 1868 GTCAATCCGCATCT 1855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620648233377920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |