Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq10234 102 1e-16 >seq10234 Length=192330 Score = 102 bits (112), Expect = 1e-16 Identities = 205/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 112274 TGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAA 112333 ||| |||| || ||||||| || ||| |||||||| ||||| ||||||||||| || Sbjct 2808 TGTATGGATCGCCATTCTCAGATCCCAAGTAGAGACTGGAACACCTTATATGCTTTATAA 2749 Query 112334 AGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCT 112393 ||| ||||| | ||| ||||| || || | || ||||| || ||| || Sbjct 2748 AGATCAATGTAATCGAAAATCGAATCACCAGCATATAGGCACTATCAAATGTAGCAATCT 2689 Query 112394 CTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG--GCTGTGTGTAACCTCGCA 112451 ||||| ||||| | |||| | | | | |||| | |||||||| || | ||| Sbjct 2688 GTGTACTGAAATTGTTGAATATTCTGGTCCTG--GAGAAGTTGCTGTGTGCAATTTAGCA 2631 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 112511 || || ||| || || || ||| || |||| || ||||| ||||||| ||| ||||| Sbjct 2630 TCTATTGCTGTCAACATGTTTGTTAATACAGATACCAAGACTTTTGATTTTGATAAACTT 2571 Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571 | ||| | |||| |||||| || ||| | | ||| ||||| |||||||| Sbjct 2570 AAAACAGTCGCAAAAATTGTCACCCGCAATCTAGATAAAGTCATTGACGTTAATTTTTAT 2511 Query 112572 CC 112573 || Sbjct 2510 CC 2509 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 ||||| || ||||| |||||||| ||||| || ||||| || || || ||||| |||| | Sbjct 1988 CTTTTAATAGCACCTATGCCAACGGCCTCGACGGCACAGATTTTAGGGAATAACGAATCC 1929 Query 112962 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 113021 ||||||| ||||||| || ||||| |||| | | | ||||||||||| || Sbjct 1928 ATTGAACCGTACACGAGCAATATCTACGTGAGGCGCGTATTATCTGGAGAGTTTGTCATC 1869 Query 113022 GTCAACAAGCATCT 113035 ||||| |||||| Sbjct 1868 GTCAATCCGCATCT 1855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620648233377920