Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10234 96.9 4e-15 >seq10234 Length=192330 Score = 96.9 bits (106), Expect = 4e-15 Identities = 236/352 (67%), Gaps = 12/352 (3%) Strand=Plus/Plus Query 106303 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAAATT 106359 ||||||||||||||||| |||||| || || |||| | ||||||||||| Sbjct 2463 ACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCG---TCTCTGGGATAGGATAAAAATT 2519 Query 106360 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 106419 |||||||||| | |||||| ||| ||||| |||| || | | |||||| || Sbjct 2520 AACGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATC 2579 Query 106420 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 106479 | |||||||||| || ||| ||| ||| || | | || || ||||| ||||| Sbjct 2580 AAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATT 2639 Query 106480 GCAAACAGC--CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||| ||||| | |||| | | | | || || | |||||| ||||||| ||| | Sbjct 2640 GCACACAGCAACTTCTC--CAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTA 2697 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG-TTGCACGCATCCTTGTAGAG 106596 | || || || || | || || || || | |||| | || || ||| || || || Sbjct 2698 CATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAG 2756 Query 106597 CATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACA 106648 ||| || || || || ||||| || || ||||||| || |||| ||| Sbjct 2757 CATATAAGGTGTTCCAGTCTCTACTTGGGATCTGAGAATGGCGATCCATACA 2808 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 105887 AGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTC 105946 |||||| ||||| || ||||||||||| | | | |||| ||||| || || Sbjct 1855 AGATGCGGATTGACGATGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTC 1914 Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| ||||||| | |||| ||||| || || || ||||| || ||||| |||||||| Sbjct 1915 GTGTACGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATA 1974 Query 106007 GGTGCCATCAAAAG 106020 ||||| || ||||| Sbjct 1975 GGTGCTATTAAAAG 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589891299912640