Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6771 163 6e-35 seq9711 161 2e-34 seq7200 140 7e-28 seq10900 118 2e-21 >seq6771 Length=7421 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| |||||| | ||| || || || || ||||| || |||||||| | |||||| || Sbjct 540 AGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTG 481 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| || || ||||| || || || ||||| || || ||||| || ||| Sbjct 480 CCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCT 421 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || ||||| || |||||||| || || |||||| ||| ||||||||||| Sbjct 420 TTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTG 361 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||||||||| | ||||| Sbjct 360 ATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| || ||||| || || || || || || || || |||| ||||||||| ||||| Sbjct 307 CAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATC 248 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || || || || || || || || || || || ||||||||||||||||||||||| Sbjct 247 TTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTC 188 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||||| ||||| || ||||| ||| ||| ||||| ||||| | || Sbjct 187 TTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGT 128 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | |||||||||||| | ||||| Sbjct 127 TTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq9711 Length=151070 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | |||||||| || ||||| ||||||||||||||||| |||| | ||| Sbjct 104469 TCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGT 104410 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || ||||| || || || ||||| || |||| ||| || || ||||||||||| Sbjct 104409 TCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCC 104350 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||||| ||| |||||||| || ||||||||| || || || || Sbjct 104349 CTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAG 104290 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || ||||| || || || | ||||| Sbjct 104289 TGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||||||| | || |||||||| ||||| ||||| || ||||| | ||| || | Sbjct 104237 AGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGG 104178 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || |||||||| || |||||||| | | || || || || || || ||||| Sbjct 104177 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 104118 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || |||||||| ||||||||||| || ||||| || ||| || || | || Sbjct 104117 TTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTG 104058 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| ||||| ||||| ||||| | |||||| Sbjct 104057 ATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||| ||||| ||||| |||| ||| || | |||||||| || || || || Sbjct 103988 GTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCA 103929 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || || || ||||| || ||||| || ||||||||||| ||| Sbjct 103928 GCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTG 103869 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||||||| ||| || || | |||| || || || || | |||| Sbjct 103868 ACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGTT 103809 Query 195124 TTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 103808 TTAACAAAAATCTGCAT 103792 >seq7200 Length=105881 Score = 140 bits (154), Expect = 7e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||||||||| || || ||||| |||||||| || | |||| || | || |||| Sbjct 104894 AACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAG-GTACGTCCGTCTT 104836 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | ||||| || || || ||||| | || || ||||| || || |||||||||||||| | Sbjct 104835 CAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCT 104776 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 |||| ||| || |||||||| || ||||| ||| || || ||||| || | |||| Sbjct 104775 GAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCT 104716 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || || ||||| | ||||| Sbjct 104715 TTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||| ||||||||||| || | ||| || | |||||||| ||||| || || Sbjct 105793 GTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCG 105734 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | | ||||| |||||||| || ||||| || || |||||||| ||| Sbjct 105733 GCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTG 105674 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || |||||||| || ||||| | |||| |||||||| ||||| ||| Sbjct 105673 ACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGTT 105614 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 105613 TTAACGAAAATTTGCAT 105597 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||||||||| |||||||| | ||| || | || || || || || || || Sbjct 105337 GTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCA 105278 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || ||| || || |||||||| ||||| || |||||||||||| ||| Sbjct 105277 GCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTTGCTTTG 105218 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || ||||||||| || ||||| | || | || |||||||| | |||| Sbjct 105217 ACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTT 105158 Query 195124 TTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 105157 TTGACAAAAATCTGCATT 105140 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||| ||||| | ||||| | ||||| || || ||||| || Sbjct 105109 GTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCAAGTTGCTTTCCA 105050 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || || || ||||| || ||||||||||| ||||||||||| ||| Sbjct 105049 GCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCTTTG 104990 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||||||| || || ||| || || || | || | |||||||| |||| ||| Sbjct 104989 ACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTT 104930 Query 195124 TTTACGAACACTTGCATT 195141 || || || | |||||| Sbjct 104929 TTAACAAAAATCTGCATT 104912 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||||||||| || ||||| | ||| || | || || || |||||||| || Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | | || || || || || || ||||| || || |||||||| ||| Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTG 105446 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 |||||||| || ||||| || ||| || || | || | |||||||| ||||| ||| Sbjct 105445 ACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGTT 105386 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 105385 TTAACAAAAATTTGCAT 105369 >seq10900 Length=227893 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||| |||||||| | ||| || | ||||| || || || || || ||||||| Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | |||| || || || || ||||| ||||| || || ||||| || ||||||||||| Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | ||||| || || ||||| || ||||| | ||||| || || | || || |||| Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 197406 AGATCTGCAT 197415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109309083932312