Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq10900 113 3e-20
seq6771 109 4e-19
seq9711 105 4e-18
seq7200 102 5e-17
>seq10900
Length=227893
Score = 113 bits (124), Expect = 3e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851
|||| |||||||| || || |||||| | ||| |||| || || ||||| || || || |
Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285
Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911
| |||| ||||| || | || | || ||||| || |||||| ||||||
Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345
Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971
| || | ||| |||||| || |||| ||| ||||| || |||||||| |||||||| |
Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405
Query 34972 AGATCTGCAT 34981
||||||||||
Sbjct 197406 AGATCTGCAT 197415
>seq6771
Length=7421
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|| ||||| |||| || ||| ||||| ||||||||||| ||||| ||| ||||
Sbjct 307 CAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATC 248
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || ||||| || ||||| ||||| || ||||| ||| | || | || || |||||
Sbjct 247 TTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTC 188
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| |||||| |||| | || || ||||| |||| ||| || ||
Sbjct 187 TTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGT 128
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| || |||||||| || || |||||||||||
Sbjct 127 TTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|||||| ||||| | ||| ||| || || ||||| || || ||||| | | ||||
Sbjct 535 CAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATC 476
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| |||||||| || || || ||||| || || || || | || | ||||| |||||
Sbjct 475 TTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTC 416
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
|| || ||| ||| |||| | || || ||||| || | ||| || ||
Sbjct 415 CTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGT 356
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| || |||||||| || || |||||||||||
Sbjct 355 TTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323
>seq9711
Length=151070
Score = 105 bits (116), Expect = 4e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
|||||| || | || ||||||||||||||| ||||| ||||| | || |||| ||
Sbjct 104001 AACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTC 103942
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||| |||||||| || || |||| || ||||| || | || | || ||||| ||
Sbjct 103941 CAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTG 103882
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||| || |||||| | | || | || || ||||| || | || ||||||||
Sbjct 103881 AATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTT 103822
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| |||||||| || ||||| |||||||||
Sbjct 103821 GCCAGTGAGAGTTTTAACAAAAATCTGCATA 103791
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||| | | ||||||||| || || | ||| |||||||||||||||||| || |||
Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || | || || ||||| |||||||| || || | | ||||| || | ||
Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| || ||||| || ||| || ||||||| | |||| || || |||||
Sbjct 104126 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 104067
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| | || ||||| |||||||| | || || || || || ||||||
Sbjct 104066 TCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 104019
Score = 82.4 bits (90), Expect = 5e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825
|||||| ||||| || | || |||||||||||||| ||||| ||||| | || |
Sbjct 103779 CCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGACC 103720
Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885
||| |||||||||||||||||||| |||| | || || ||| | || | || |||||
Sbjct 103719 ATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTT 103660
Query 34886 GTC 34888
||
Sbjct 103659 ATC 103657
>seq7200
Length=105881
Score = 102 bits (112), Expect = 5e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || ||| || || || || ||||| || | | | ||| | || ||
Sbjct 104894 AACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTC 104835
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||||||||| ||||| || | || |||||||| | || | || || |||||
Sbjct 104834 AAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTG 104775
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| ||| ||| | || | ||| |||||||| || | |||||||| ||
Sbjct 104774 AATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTT 104715
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | |||||||| || |||||||||
Sbjct 104714 TCCAGTCAACGTCTTCACGAAAATCTGCATA 104684
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
|||||| |||||||| || || ||||| | || | || || || ||||| || |||||
Sbjct 105332 TTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAA 105273
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | || |||||| || | || | || ||||| || ||| || |||||||
Sbjct 105272 GATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTT 105213
Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| | |||| || ||||| || || | || ||||||||||| |||||||| || ||
Sbjct 105212 TTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGAC 105153
Query 34970 AAAGATCTGCAT 34981
||| ||||||||
Sbjct 105152 AAAAATCTGCAT 105141
Score = 96.9 bits (106), Expect = 2e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
|||||| || | || |||||||||||| || ||||| ||||| | || |||| ||
Sbjct 105806 AACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTC 105747
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||||||||||||||| |||| | || || ||| | || | || ||||| ||
Sbjct 105746 CAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTG 105687
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||| || |||||| | | |||| || |||||||| || | || ||||| ||
Sbjct 105686 AATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTT 105627
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| || | || || || || || ||||||
Sbjct 105626 TCCAGTCAATGTTTTAACGAAAATTTGCATA 105596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324585584255808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |