Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10900 113 3e-20 seq6771 109 4e-19 seq9711 105 4e-18 seq7200 102 5e-17 >seq10900 Length=227893 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| |||||||| || || |||||| | ||| |||| || || ||||| || || || | Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | |||| ||||| || | || | || ||||| || |||||| |||||| Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| |||||| || |||| ||| ||||| || |||||||| |||||||| | Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 197406 AGATCTGCAT 197415 >seq6771 Length=7421 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||| |||| || ||| ||||| ||||||||||| ||||| ||| |||| Sbjct 307 CAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATC 248 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||| || ||||| ||||| || ||||| ||| | || | || || ||||| Sbjct 247 TTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTC 188 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| |||| | || || ||||| |||| ||| || || Sbjct 187 TTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGT 128 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || |||||||| || || ||||||||||| Sbjct 127 TTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| ||||| | ||| ||| || || ||||| || || ||||| | | |||| Sbjct 535 CAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATC 476 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || |||||||| || || || ||||| || || || || | || | ||||| ||||| Sbjct 475 TTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTC 416 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || ||| ||| |||| | || || ||||| || | ||| || || Sbjct 415 CTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGT 356 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || |||||||| || || ||||||||||| Sbjct 355 TTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 >seq9711 Length=151070 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | || ||||||||||||||| ||||| ||||| | || |||| || Sbjct 104001 AACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTC 103942 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| |||||||| || || |||| || ||||| || | || | || ||||| || Sbjct 103941 CAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTG 103882 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | || | || || ||||| || | || |||||||| Sbjct 103881 AATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTT 103822 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||| || ||||| ||||||||| Sbjct 103821 GCCAGTGAGAGTTTTAACAAAAATCTGCATA 103791 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | | ||||||||| || || | ||| |||||||||||||||||| || ||| Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || ||||| |||||||| || || | | ||||| || | || Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||| || ||||||| | |||| || || ||||| Sbjct 104126 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 104067 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| |||||||| | || || || || || |||||| Sbjct 104066 TCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 104019 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||| ||||| || | || |||||||||||||| ||||| ||||| | || | Sbjct 103779 CCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGACC 103720 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||||||||||||||||||| |||| | || || ||| | || | || ||||| Sbjct 103719 ATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTT 103660 Query 34886 GTC 34888 || Sbjct 103659 ATC 103657 >seq7200 Length=105881 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||| || || || || ||||| || | | | ||| | || || Sbjct 104894 AACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTC 104835 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||||| ||||| || | || |||||||| | || | || || ||||| Sbjct 104834 AAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTG 104775 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||| ||| | || | ||| |||||||| || | |||||||| || Sbjct 104774 AATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTT 104715 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | |||||||| || ||||||||| Sbjct 104714 TCCAGTCAACGTCTTCACGAAAATCTGCATA 104684 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| |||||||| || || ||||| | || | || || || ||||| || ||||| Sbjct 105332 TTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAA 105273 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||| || | || | || ||||| || ||| || ||||||| Sbjct 105272 GATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTT 105213 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || ||||| || || | || ||||||||||| |||||||| || || Sbjct 105212 TTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGAC 105153 Query 34970 AAAGATCTGCAT 34981 ||| |||||||| Sbjct 105152 AAAAATCTGCAT 105141 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | || |||||||||||| || ||||| ||||| | || |||| || Sbjct 105806 AACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTC 105747 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||||||| |||| | || || ||| | || | || ||||| || Sbjct 105746 CAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTG 105687 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | |||| || |||||||| || | || ||||| || Sbjct 105686 AATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTT 105627 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || || || || || |||||| Sbjct 105626 TCCAGTCAATGTTTTAACGAAAATTTGCATA 105596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324585584255808