Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq10234 111 2e-19
seq10678 104 3e-17
>seq10234
Length=192330
Score = 111 bits (122), Expect = 2e-19
Identities = 161/222 (73%), Gaps = 13/222 (6%)
Strand=Plus/Plus
Query 47833 TTAA-TTTATTAAAATCAAA---CTTGTTATTTATA---ACAAACCTATTAAGTGCTATA 47885
|||| ||||| ||||||||| |||| ||| | || |||||| | || | || |||
Sbjct 2569 TTAAGTTTATCAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATA 2628
Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945
||||||| ||| || ||||| || || ||| || ||||| | ||||||| |||
Sbjct 2629 GATGCTAAATTGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACAC 2688
Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG-TTACATGCG 48002
||||| | |||||||||||| || | || || ||||| ||| | | ||||||
Sbjct 2689 AGATTGCTACATTTGATAGTGCCTATATGCTGGTGATTCGATT---TTCGATTACATTGA 2745
Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044
|| || ||||||||| ||||||||||||| |||| || |||
Sbjct 2746 TCTTTATAAAGCATATAAGGTGTTCCAGTCTCTACTTGGGAT 2787
Score = 89.7 bits (98), Expect = 6e-13
Identities = 162/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668
||||||| |||||| || ||||| |||| || || || || | || || || ||
Sbjct 3606 TTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATAATTGTACGTCTCT 3665
Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728
||| | || || || || || ||||| | || || | ||| ||||||| ||||
Sbjct 3666 ATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATGTTGA 3725
Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788
|| || ||||| |||||| ||| ||||||| ||||| | | || | ||||||||||
Sbjct 3726 GGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTTAAAA 3785
Query 48789 CCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCC 48845
|||| ||| || || ||||| ||||| || || | |||| | ||| |||
Sbjct 3786 CCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTCC 3842
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328
||| ||| | ||||| ||||| || | ||| || | ||||||||||||||||| |||||
Sbjct 3206 ATTACCAATGTTCCTCTTAAGCTCTAAAAAATCAAAAATATCAGCATGCCATGGCTCTAA 3265
Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376
||| || || | | ||||||| ||| || ||||||||||| | |||
Sbjct 3266 ATAAATAGCAAACGCTCCTGGTCTTTTGTTTCCTCCTTGATCAACATA 3313
Score = 82.4 bits (90), Expect = 9e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159
|| || | ||| |||||||| |||||||| || || |||| ||||||||||| ||
Sbjct 1566 ATGTGTACATTTAGAGATTGCGATTGATCAATGAAAGCTCCTCGGTCAGCTGCCATTTCG 1625
Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199
| ||| || | |||||||||||||||||||| || ||||
Sbjct 1626 AGAATTACTTTCTGTGGTATCTCCCATACTGTCTTGTAAA 1665
Score = 82.4 bits (90), Expect = 9e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 47541 CCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCA 47600
||||| || | |||| ||| | |||||||| |||| ||| | | ||| | ||||
Sbjct 2168 CCTTTGCTGACCGGACTACCTTGATATGTTTCGTAAGTACCTTTTTCCGCAGCTAATTCA 2227
Query 47601 CAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT 47660
||||| | ||| || |||| |||||| | || ||||| ||||||||||| || | | ||
Sbjct 2228 CAACTAGATTCTAAGGCACCATAATAGAGCGTCTCAAAGATTTTTATGTTGAGCTCCTTT 2287
Query 47661 GCTTCTGATGAT-TCAAAAGGATA 47683
|||||| || | || ||||||||
Sbjct 2288 GCTTCT-TTGCTCTCGAAAGGATA 2310
>seq10678
Length=68604
Score = 104 bits (114), Expect = 3e-17
Identities = 138/191 (72%), Gaps = 3/191 (2%)
Strand=Plus/Minus
Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314
|||||||| ||||||||||| ||||| ||||| || || ||||| ||||| | ||||||
Sbjct 45469 TACATTTCGGAATGAATATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCA 45410
Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374
| | | || || || |||||||| | || ||| || ||||| || |||||| |
Sbjct 45409 GCGACTTTCACCTCCTGACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAA 45350
Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT---A 19431
|| || |||||||| || ||||| ||||| | | |||| || || ||| | | |
Sbjct 45349 GCGGCGAAAAATGCCAAGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCA 45290
Query 19432 TTCCAATCATT 19442
| |||||| ||
Sbjct 45289 TCCCAATCCTT 45279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562023528095040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |