Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10234 111 2e-19 seq10678 104 3e-17 >seq10234 Length=192330 Score = 111 bits (122), Expect = 2e-19 Identities = 161/222 (73%), Gaps = 13/222 (6%) Strand=Plus/Plus Query 47833 TTAA-TTTATTAAAATCAAA---CTTGTTATTTATA---ACAAACCTATTAAGTGCTATA 47885 |||| ||||| ||||||||| |||| ||| | || |||||| | || | || ||| Sbjct 2569 TTAAGTTTATCAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATA 2628 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 ||||||| ||| || ||||| || || ||| || ||||| | ||||||| ||| Sbjct 2629 GATGCTAAATTGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACAC 2688 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTG-TTACATGCG 48002 ||||| | |||||||||||| || | || || ||||| ||| | | |||||| Sbjct 2689 AGATTGCTACATTTGATAGTGCCTATATGCTGGTGATTCGATT---TTCGATTACATTGA 2745 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 || || ||||||||| ||||||||||||| |||| || ||| Sbjct 2746 TCTTTATAAAGCATATAAGGTGTTCCAGTCTCTACTTGGGAT 2787 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||||| |||||| || ||||| |||| || || || || | || || || || Sbjct 3606 TTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATAATTGTACGTCTCT 3665 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | || || || || || ||||| | || || | ||| ||||||| |||| Sbjct 3666 ATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATGTTGA 3725 Query 48729 GGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAA 48788 || || ||||| |||||| ||| ||||||| ||||| | | || | |||||||||| Sbjct 3726 GGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTTAAAA 3785 Query 48789 CCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCC 48845 |||| ||| || || ||||| ||||| || || | |||| | ||| ||| Sbjct 3786 CCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTCC 3842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 ||| ||| | ||||| ||||| || | ||| || | ||||||||||||||||| ||||| Sbjct 3206 ATTACCAATGTTCCTCTTAAGCTCTAAAAAATCAAAAATATCAGCATGCCATGGCTCTAA 3265 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||| || || | | ||||||| ||| || ||||||||||| | ||| Sbjct 3266 ATAAATAGCAAACGCTCCTGGTCTTTTGTTTCCTCCTTGATCAACATA 3313 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 || || | ||| |||||||| |||||||| || || |||| ||||||||||| || Sbjct 1566 ATGTGTACATTTAGAGATTGCGATTGATCAATGAAAGCTCCTCGGTCAGCTGCCATTTCG 1625 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA 47199 | ||| || | |||||||||||||||||||| || |||| Sbjct 1626 AGAATTACTTTCTGTGGTATCTCCCATACTGTCTTGTAAA 1665 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 47541 CCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCA 47600 ||||| || | |||| ||| | |||||||| |||| ||| | | ||| | |||| Sbjct 2168 CCTTTGCTGACCGGACTACCTTGATATGTTTCGTAAGTACCTTTTTCCGCAGCTAATTCA 2227 Query 47601 CAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT 47660 ||||| | ||| || |||| |||||| | || ||||| ||||||||||| || | | || Sbjct 2228 CAACTAGATTCTAAGGCACCATAATAGAGCGTCTCAAAGATTTTTATGTTGAGCTCCTTT 2287 Query 47661 GCTTCTGATGAT-TCAAAAGGATA 47683 |||||| || | || |||||||| Sbjct 2288 GCTTCT-TTGCTCTCGAAAGGATA 2310 >seq10678 Length=68604 Score = 104 bits (114), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| ||||||||||| ||||| ||||| || || ||||| ||||| | |||||| Sbjct 45469 TACATTTCGGAATGAATATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCA 45410 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | | | || || || |||||||| | || ||| || ||||| || |||||| | Sbjct 45409 GCGACTTTCACCTCCTGACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAA 45350 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT---A 19431 || || |||||||| || ||||| ||||| | | |||| || || ||| | | | Sbjct 45349 GCGGCGAAAAATGCCAAGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCA 45290 Query 19432 TTCCAATCATT 19442 | |||||| || Sbjct 45289 TCCCAATCCTT 45279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562023528095040