Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11428 156 3e-32 seq10579 134 1e-25 seq6771 134 1e-25 seq9711 118 9e-21 seq7200 118 9e-21 seq10900 96.9 3e-14 seq10855 96.9 3e-14 >seq11428 Length=72031 Score = 156 bits (172), Expect = 3e-32 Identities = 400/605 (66%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 ||||| || || ||||| || |||| | ||| | ||| | ||||||| || || || Sbjct 20048 GATTCGTTGTTCGAGGGTATAGATTTCTACACGTCAATTACCAGGGCCAGGTTCGAGGAG 19989 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 ||||| | ||||| ||||||| || ||||||| || || | | | ||||| | Sbjct 19988 CTTTGTGCGGATCTGTTTAGAAGCACCCTTGAACCCGTGGAGAAGGCGCTTAGAGACGCG 19929 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||||| || || | | || || || || || || ||||| || || || || || Sbjct 19928 AAGATGGACAAGGCACAGGTTCACAGTATCGTTCTAGTCGGTGGCTCGACCAGGATACCA 19869 Query 552153 AAAATTCGCGAAATGTTAAGTTC----TTATTTCAATGGTAAAAAATTAAATGAAAGTGT 552208 || |||| ||| | || ||| || |||||||| || ||||||| || | | Sbjct 19868 AAGATTC---AAAAGCTAC-TTCAAGATTTCTTCAATGGCAAGGAATTAAACAAATCTAT 19813 Query 552209 TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG--GA 552266 |||||| ||||||||||||||||| || || ||| |||| || || ||| | || || Sbjct 19812 TAATCCGGATGAGGCTGTTGCCTACGGCGCGGCAGTTCAGGCGGCGATTTTACATGGTGA 19753 Query 552267 CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 |||| ||| | ||| || | | || | || || || || | || | ||| Sbjct 19752 CAAA--TCCGAAGCGGTCCAAGATTTACTTCTGCTGGACGTGACACCGTTGTCATTGGGT 19695 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || | ||||| | | ||| | || ||||| || || || Sbjct 19694 ATTGAGACCGCTGGTGGCGTCATGACCACCTTGATCAAGAGGAATACGACGATACCAACG 19635 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 ||| | | | ||| | |||||||| || |||||| | | || |||||| | Sbjct 19634 AAACAGACCCAGACGTTTACAACGTATTCCGACAATCAACCGGGAGTACTTATTCAAGTC 19575 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 | || ||||| ||| | || || ||||| ||| || || | || | || Sbjct 19574 TACGAGGGAGAGAGAGCGATGACGAAGGATAACAATATTCTCGGCAAATTCGAGTTGACT 19515 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| ||||| || ||| | || ||||||||||||||||| || ||||||||||||||| Sbjct 19514 GGTATACCTCCGGCGCCTAGAGGGGTACCGCAAATTGAAGTCACCTTCGATATCGATGCC 19455 Query 552567 AATGG 552571 || || Sbjct 19454 AACGG 19450 >seq10579 Length=342791 Score = 134 bits (148), Expect = 1e-25 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| ||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 110100 ATGCTGTTATTACTGTGCCAGCATATTTTAATGATTCACAACGACAAGCGACAAAAGATG 110041 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||||||| | ||||| |||||| | || || ||||| || || ||||||| Sbjct 110040 CTGGTCAAATTGCTGGATTAAATGTGCTTCGTGTAATTAACGAACCAACCGCAGCTGCAC 109981 Query 550518 TTGCATATGGACTTGATAAACA 550539 |||| || || | ||||| || Sbjct 109980 TTGCTTACGGCATGGATAAGCA 109959 Score = 96.9 bits (106), Expect = 3e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 || ||||| | || ||| || |||||||||||||||| || ||||| | ||| || Sbjct 109971 CCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACACGAAGCACATTTAATCCAGCA 110030 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 |||| |||||| || ||||| ||||||| ||||||||||||||| || |||||| Sbjct 110031 ATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATCATTAAAATATGCTGGCACAGTA 110090 Query 361826 ATCACTGCTTTTT 361838 || || || |||| Sbjct 110091 ATAACAGCATTTT 110103 Score = 93.3 bits (102), Expect = 3e-13 Identities = 190/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 ||| ||| | |||||| |||| ||| | | || | | ||| | | ||||| ||||| Sbjct 108890 TCTAGGTATTGAAACACTTGGCGGTGTGTTTACGAGATTAATCTCTCGTAATACAACTAT 108831 Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 ||| ||||| || |||||||||||| | ||| |||||| || || Sbjct 108830 ACCTACAAAAAAGAGTCAGGTATTTTCTACGGCAGCGGATGGTCAAACACAAGTAGAGAT 108771 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAA 552499 | || || | |||| ||| || || | ||| |||||||| | ||| | || || | Sbjct 108770 TAAAGTTCATCAAGGCGAACGAGAAATGGCTAGTGATAATAAACT-CTTAGGACAGTTCA 108712 Query 552500 TT-TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | | |||||||| ||||| || | || ||||||||||| ||||| || || |||| Sbjct 108711 GTCTTGTTGGTATTCCACCTGCACCAAGAGGTGTACCGCAAATAGAAGTAACGTTTGATA 108652 Query 552559 TCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||||| || || || || ||||| | || | ||||| Sbjct 108651 TCGATGCGAACGGTATAGTGCATGTGTCAGCCAGAGATAA 108612 >seq6771 Length=7421 Score = 134 bits (148), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| ||| ||| || || || || || | |||||||| Sbjct 312 AGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTG 253 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||| || |||||||| || | |||||||| |||||||| |||||| Sbjct 252 CCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCT 193 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAG 563434 || ||||| || || ||| || ||| || || || || | || |||||| | Sbjct 192 TTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTC--TGAAGCTTCAACTTCGAGGG 135 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | |||||||||||| |||||||| ||||| || ||||| Sbjct 134 TGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq9711 Length=151070 Score = 118 bits (130), Expect = 9e-21 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| || | ||| | ||| |||||| ||| ||||| || | || || | Sbjct 104007 ACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCC 103948 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| ||||||||||| || || || | ||| |||||||| ||||| |||||||| || Sbjct 103947 ATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTT 103888 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGAGAGT 563435 |||||||||||| ||| || |||||||| || || | | || || | || Sbjct 103887 ATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA--AC-CTCCAATGT 103831 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||||| ||||| ||||||||||| ||||| |||||| Sbjct 103830 AATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCATA 103791 Score = 111 bits (122), Expect = 1e-18 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || |||||||| || || || |||||| ||||||||| || | | |||| Sbjct 104468 CTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTT 104409 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | || || |||||||| || || ||||| |||||||||||||| |||||||| || Sbjct 104408 CGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCC 104349 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 ||||| ||||||||||| || || ||| ||||| || | | || || || Sbjct 104348 TCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGAC-CTCTAG 104290 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | |||||| ||||| | ||| || || || || |||||| Sbjct 104289 TGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCATA 104247 >seq7200 Length=105881 Score = 118 bits (130), Expect = 9e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATG-AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTG 563317 ||| || || | ||| |||| | || |||| | |||||| ||||| | ||||| | Sbjct 105128 ACGAAGAACCAAATGCAAGGTTGATTCCTTTTG-AATATTATAATCTGAGAGAGTACGAC 105070 Query 563318 AATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTT 563377 ||| |||||||| ||||| ||||| || | ||| |||||||| || || || ||||||| Sbjct 105069 CATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTT 105010 Query 563378 TATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTA 563436 ||||||||||||| ||| || |||||| ||||||| | ||| || | ||| Sbjct 105009 TATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTAC-CTCCAAAGTG 104951 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || |||||||| ||||| ||||| Sbjct 104950 ATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 Score = 111 bits (122), Expect = 1e-18 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 |||||| || | ||| | ||| |||||| ||||||||| |||| || || | Sbjct 105812 ACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACC 105753 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || |||||||||||||| || | || || ||||| ||||| |||||||| || Sbjct 105752 ATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTT 105693 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAA 563437 ||| |||||||| ||| || || || || || | || | | ||| | |||| Sbjct 105692 ATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCG-ATGCCTCAACTTCCAATGTAA 105634 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || ||||| | ||||||||||||||||||||| Sbjct 105633 TGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATA 105596 Score = 107 bits (118), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 ||||| || | ||| | || |||||| ||| |||||||||| || || | Sbjct 105355 CGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCG 105296 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || ||||||||||| || ||||| || | |||||||||||| |||||||||||||| ||| Sbjct 105295 TCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTA 105236 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAAC 563438 |||||||||||| ||| || || || || || | | || ||| | || | Sbjct 105235 TCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGAC-TTCCAATGTGAT 105177 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || |||||||| || ||||| ||||| Sbjct 105176 GGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 >seq10900 Length=227893 Score = 96.9 bits (106), Expect = 3e-14 Identities = 143/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 563278 GTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCG 563337 |||| || |||| ||| |||||||| | || || | | ||| || |||||||| || Sbjct 197222 GTACCTT-TTTG--AATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCA 197278 Query 563338 GCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTT 563397 || || || ||||| |||||||| || ||||||||||| ||||| ||||| || || Sbjct 197279 GCGAAGATGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTG 197338 Query 563398 ACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGT 563456 || ||| || ||||||| | | | || ||||| || | || ||||| || || || Sbjct 197339 ACGTTCTCGATGGTATCAGAG-GCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGT 197397 Query 563457 TTTAACGAAAATTTGCAT 563474 || ||||| || ||||| Sbjct 197398 CTTCACGAAGATCTGCAT 197415 >seq10855 Length=168727 Score = 96.9 bits (106), Expect = 3e-14 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||||||| || || |||||||| ||||||||| | ||||| ||| | ||||| | Sbjct 26447 TTGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTGGGACACTTGAGGTCTACGA 26388 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCA 930783 | ||||| || | | ||||||| ||||| | ||| | | || || ||| Sbjct 26387 TAATTGGTGACAGTATTGCGAGATTATTAGAATACTTAGGACTTGACGTGTTGAGACTCA 26328 Query 930784 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||||| | ||||| ||||| ||||| ||||||||||| || || Sbjct 26327 ATCATGTAGGTGACTGGGGTACACAGTTTGGTATGTTGATAGC 26285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028654193586640