Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq7345 163 7e-36 >seq7345 Length=15758 Score = 163 bits (180), Expect = 7e-36 Identities = 661/1030 (64%), Gaps = 25/1030 (2%) Strand=Plus/Plus Query 32864 CGACAACCTGCTTTCCGTCGCCAAAGCCAAAGTGCTGGTGGCGCTGGGCGAAGGGGAGTT 32923 ||||| ||||| || ||||| | ||||| | ||| | || |||||||||| ||||| Sbjct 7322 CGACAGCCTGCGCTCGGTCGCGATGGCCAAGATTCTGCTCGCCGTGGGCGAAGGCGAGTT 7381 Query 32924 CGACGGC---CAGCTTGATGGCAAATCCATATTCCTGGACGGCACGCCGCTGGTGAACGC 32980 || |||| | | || || | || | ||| ||| ||| |||||| || || | Sbjct 7382 CGCCGGCGTTCCGAGCGAGCGCGAT---ATCTACCTCGACAACACCCCGCTGATGGAC-C 7437 Query 32981 CGA-CGGGAGCGAGAATTTTCCCGGCGTGAAATGGGAGTTTCGCCCCGGCACACAGGCGC 33039 ||| ||| | | ||| || || ||| || ||||||| ||| | || | || | Sbjct 7438 CGAGCGGTAACCTGAACTTCCCGAACGTTAAGTGGGAGTGGCGCGCGGGGTCGGTGGACC 7497 Query 33040 AGGAATACATTCAGGGCATTCCCGGTGCTGAAAACGAATTCCCGCTGACGAATATGCAAA 33099 |||| || || | |||||||| | | ||| ||||| | ||| | || | | Sbjct 7498 AGGACTATATCCCTGGCATTCCTGCGGTTGAGAACGAGA--CGTCTGTC-AACGTCGAGT 7554 Query 33100 TCACCACGGAAAAGGGCTGGACGCGCACCTTTGACGACGCCACGCTCTCCGCCGTTCGCC 33159 | || || | | |||| |||| | | | | | ||| ||||| || || | Sbjct 7555 TGCGCAGCGATACGCCCTGGGTGCGCTCGCTGAGCAATATCCAGCTTTCCGCAGTGCGTC 7614 Query 33160 TGCGCATCAAGTGGCCGCAGCTCTTTGAGCAGAAAGATAACGGCGACATGGTGGGCTACA 33219 ||||| || ||||| |||| ||||| | |||||| |||| | || ||| Sbjct 7615 TGCGCTTCGCCTGGCCAGCGCTCCAGCAGCAGGACACCAACGGCAACATCGGCGGGTACC 7674 Query 33220 CGCTGGAATACGTGGTTGAAATGCAGGTTGACGGCGGGAGCTGGCAGCAGGTGCTGAAAA 33279 | | ||||| | || || || |||||||| || ||| |||||||| Sbjct 7675 GGATCGAATATGCCGTAGATCTGGCCACCGACGGCGGCGCCTATCAGGAGGTGCTGCGCG 7734 Query 33280 CGGCGGTATCCGGCAAAACCACCAGCGGCTACGAGCGGAGCCACCGCATTGATTTACCGG 33339 ||| || ||||| ||||||| | |||||||||| || ||| || || | |||| Sbjct 7735 AGGCCGTCGATGGCAAGACCACCACCCGCTACGAGCGTTCCCGCCGGATCGACCTGCCGG 7794 Query 33340 CCGGTAA-AACG--TGGAACCTTCGCCTGCGCAGGCTCACCCCGAACGCGAACAGCGCAC 33396 | | | || | ||| | | ||| | ||| | || || |||||| ||||| | | Sbjct 7795 CGGCCACCAATGGCTGGCAGGTGCGCGTCCGCCGCCTGACGCCGAACCAGAACAACAACC 7854 Query 33397 GCATCGGCGACACCATGATGCTGGAAAGCTACACCACCATTATTGACGCGAAGCTGCGCT 33456 |||||| |||||||||| || | | |||||||| | || |||||||||||||||| Sbjct 7855 GCATCGCCGACACCATGCTGATCGCCGGCTACACCGAGGTGATCGACGCGAAGCTGCGCT 7914 Query 33457 ATCCGAACACCGCCTTACTCTACATGGAATT-TGATTCGAGCCAGTTTAACGGCTCTATT 33515 | |||||||| ||| | || ||| | || || | ||| ||||| | || ||| Sbjct 7915 ACCCGAACACGGCCCTGCTGTACGTCGAGTTCAGCGCAGAG-CAGTT---CAGCAACATT 7970 Query 33516 CCGCAAATCTCCTGCGAGCCGCGCGGGCGTGTCATTCGCGTTCCTGCGAACTATGACCCC 33575 ||| || | ||| |||||||| | | || || || || || || Sbjct 7971 CCGGCTGTCACAGTCGACTGCCGCGGGCGGAAGGTCCAAGTGCCGAGCAATTACGATCCG 8030 Query 33576 GACACCCGCAGCTATACCGGCACCTGGGATGGCACGTTTAAATGGGCGTGGACGGATAAC 33635 || ||||| ||| ||||| |||||| |||||| | ||| ||| ||||| || ||| Sbjct 8031 GAGACCCGGGCCTACCTCGGCATCTGGGACGGCACGATGAAACAGGCCTGGACCGACAAC 8090 Query 33636 CCGGCCTGGGTGTTTTACGACCTGGTGATCACTGATCGCTTCGGACTCGGCGACCGGCTG 33695 |||| |||| |||||| | |||| || ||||||||||| | || | || | Sbjct 8091 CCGGTCTGGCACACCTACGACATCGTGACCAACGATCGCTTCGGTGTGGGTAAACGCATC 8150 Query 33696 GACGCCGATAACGTGGACAAATGGGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATG 33755 | ||| | || ||| |||| | | |||| | | | || |||||||| ||| || Sbjct 8151 AAGGCCTGGATGGTAGACCGTTGGGAGATGTACCGGATTTCCCAGTACTGCGACCAGTTG 8210 Query 33756 GTGCCGGACGGCAGGGGCGGCGACGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTG 33815 |||||||| || | ||| ||| | ||||| || | | |||||| | || || Sbjct 8211 GTGCCGGATGGGAAGGG------TGGCCAGGAGCCGCGACACACCTGCAACCTGAACCTG 8264 Query 33816 CAGAGCCGGGCCGACGCATTCACGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCATG 33875 || ||||| |||| || | | | |||||||| | | || |||| ||| || ||| Sbjct 8265 CAAAGCCGCGCCGGGGCCTGGGAGCTGCTGCGCGACCTCACCGCTATCTACCGTGGTATG 8324 Query 33876 ACTTACTGGG 33885 | ||||||| Sbjct 8325 GCGTACTGGG 8334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127776782794752