Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_019406.1
Length=279967
Score E
Sequences producing significant alignments: (Bits) Value
seq8239 127 4e-24
seq5879 91.5 3e-13
seq8122 89.7 9e-13
>seq8239
Length=1603
Score = 127 bits (140), Expect = 4e-24
Identities = 154/206 (75%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 169262 CATGCCGCAGCCGATGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGAT 169321
|||||||||||||||||||||||||||||| |||||| | |||| | |||||||||
Sbjct 1596 CATGCCGCAGCCGATGTCGACGCCGACCGCCGCCGGGATGATCGCACCGCGGGTCGGGAT 1537
Query 169322 CACCGAACCAACGGCTGCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTT 169381
|||||| || |||| ||||| | || ||| ||||| |||||||| || || |
Sbjct 1536 CACCGAGCCCACGGTCGCGCCCTTGCCCAGGTGCACGTCCGGCATCACGGCCACCCACGG 1477
Query 169382 GAACACGAACGGCAGCCCGGCGACGTTGTGGGCCTGATCTTCGGCGCC-GCG-CTCGAAA 169439
|||||||| | | |||||| |||| | ||| || | ||||| ||| ||| |
Sbjct 1476 CCCGACGAACGGGATCGCGGCGATGTTGCGCAGCTGCTCAT--GCGCCTGCGCCTCCAGC 1419
Query 169440 GGCACACCGTCGACCCAAGCCTTGAT 169465
|||||||||| |||||| |||||||
Sbjct 1418 GGCACACCGTTGACCCAGCCCTTGAT 1393
>seq5879
Length=8971
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018
|||||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||
Sbjct 7458 TGATGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTC 7517
Query 133019 AAATCCCTCCCCCGC 133033
|||||| |||||||
Sbjct 7518 AAATCCTGCCCCCGC 7532
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 132962 TGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAA 133021
||||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||
Sbjct 7300 TGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAA 7359
Query 133022 TCCCTCCCCCGC 133033
||| |||||||
Sbjct 7360 TCCTGCCCCCGC 7371
>seq8122
Length=1078
Score = 89.7 bits (98), Expect = 9e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019
|| |||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||
Sbjct 548 GACGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCA 607
Query 133020 AATCCCTCCCCCGCATCCA 133038
||||| |||||||| |||
Sbjct 608 AATCCTGCCCCCGCAACCA 626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 895630512237120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |