Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq8239 127 4e-24 seq5879 91.5 3e-13 seq8122 89.7 9e-13 >seq8239 Length=1603 Score = 127 bits (140), Expect = 4e-24 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 169262 CATGCCGCAGCCGATGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGAT 169321 |||||||||||||||||||||||||||||| |||||| | |||| | ||||||||| Sbjct 1596 CATGCCGCAGCCGATGTCGACGCCGACCGCCGCCGGGATGATCGCACCGCGGGTCGGGAT 1537 Query 169322 CACCGAACCAACGGCTGCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTT 169381 |||||| || |||| ||||| | || ||| ||||| |||||||| || || | Sbjct 1536 CACCGAGCCCACGGTCGCGCCCTTGCCCAGGTGCACGTCCGGCATCACGGCCACCCACGG 1477 Query 169382 GAACACGAACGGCAGCCCGGCGACGTTGTGGGCCTGATCTTCGGCGCC-GCG-CTCGAAA 169439 |||||||| | | |||||| |||| | ||| || | ||||| ||| ||| | Sbjct 1476 CCCGACGAACGGGATCGCGGCGATGTTGCGCAGCTGCTCAT--GCGCCTGCGCCTCCAGC 1419 Query 169440 GGCACACCGTCGACCCAAGCCTTGAT 169465 |||||||||| |||||| ||||||| Sbjct 1418 GGCACACCGTTGACCCAGCCCTTGAT 1393 >seq5879 Length=8971 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 132959 TGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTC 133018 |||||||||||||||||||| || ||||||| ||||||||||| ||||||| ||||| Sbjct 7458 TGATGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTC 7517 Query 133019 AAATCCCTCCCCCGC 133033 |||||| ||||||| Sbjct 7518 AAATCCTGCCCCCGC 7532 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 132962 TGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAA 133021 ||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||||| Sbjct 7300 TGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAA 7359 Query 133022 TCCCTCCCCCGC 133033 ||| ||||||| Sbjct 7360 TCCTGCCCCCGC 7371 >seq8122 Length=1078 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || |||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| Sbjct 548 GACGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCA 607 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| |||||||| ||| Sbjct 608 AATCCTGCCCCCGCAACCA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895630512237120