Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_019544.1
Length=49335
Score E
Sequences producing significant alignments: (Bits) Value
seq2842 187 8e-43
>seq2842
Length=3006
Score = 187 bits (206), Expect = 8e-43
Identities = 474/715 (66%), Gaps = 6/715 (1%)
Strand=Plus/Plus
Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580
||||||||| | ||| ||||||| || | | || || |||||||| || || || ||
Sbjct 1378 GTGTTCGGCTGGCAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAG 1437
Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640
||| |||| | ||||||||||| | || ||||| ||||| | || ||||| || ||
Sbjct 1438 AAGCTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAAC 1497
Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700
| |||| || |||| || ||| ||| ||||||||||||||||| || || |||
Sbjct 1498 ATCGGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGC 1557
Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACG 45760
|| |||||||| |||||||| ||| ||||| ||| |||||||| |
Sbjct 1558 GACCTCGGCCCGGTCTACGGCAGGCAGTGGCGAAGCTGGGCCACCGCTGACGGCCGCGAG 1617
Query 45761 GTCGACCAAATTGCGGCGG-TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTT 45819
||||||| | ||| | || | | | || |||||||||||||| | ||||| ||| |
Sbjct 1618 ATCGACCAGA-TGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCT 1676
Query 45820 GCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTA 45879
| | || ||||| |||||||||| || | | | ||| | || || || || |
Sbjct 1677 GGTGGTCAGCGCCTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAA 1736
Query 45880 CGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGT 45939
| || ||||| ||||| | | | ||| | | ||| | | | ||||| |
Sbjct 1737 CCTGTTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGG 1796
Query 45940 CGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGT 45999
|| | || || || ||||||| |||||||| ||||| |||||| |||| || |||||
Sbjct 1797 TGACATCTTCCTCGGTGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGT 1856
Query 46000 TGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059
|| || || ||| | || ||||| || | || || |||| || |
Sbjct 1857 GGCGCAGGCCACCGGCCTGGGCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCT 1916
Query 46060 GTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCC 46119
|||| || || | || || || ||||||| |||| || |||||| |||||||
Sbjct 1917 GTACTCGAACCACTTCGAGCAGGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCC 1976
Query 46120 GAAGCTCGTGATCAAA--CGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTT 46177
|| ||| ||| | || |||| | ||| | | || | || | | ||| || |
Sbjct 1977 GACGCT-GTGGTTGAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATC 2034
Query 46178 GAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232
| | ||| || ||||||||||||||||| ||||| || || | || ||||
Sbjct 2035 CGCATCGACGGGTACGACCCGCACCCGGCGATCAAGGCGCCGGTGGCGGTATGAG 2089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157727665801104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |