Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq2842 187 8e-43 >seq2842 Length=3006 Score = 187 bits (206), Expect = 8e-43 Identities = 474/715 (66%), Gaps = 6/715 (1%) Strand=Plus/Plus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 ||||||||| | ||| ||||||| || | | || || |||||||| || || || || Sbjct 1378 GTGTTCGGCTGGCAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAG 1437 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 ||| |||| | ||||||||||| | || ||||| ||||| | || ||||| || || Sbjct 1438 AAGCTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAAC 1497 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700 | |||| || |||| || ||| ||| ||||||||||||||||| || || ||| Sbjct 1498 ATCGGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGC 1557 Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACG 45760 || |||||||| |||||||| ||| ||||| ||| |||||||| | Sbjct 1558 GACCTCGGCCCGGTCTACGGCAGGCAGTGGCGAAGCTGGGCCACCGCTGACGGCCGCGAG 1617 Query 45761 GTCGACCAAATTGCGGCGG-TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTT 45819 ||||||| | ||| | || | | | || |||||||||||||| | ||||| ||| | Sbjct 1618 ATCGACCAGA-TGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCT 1676 Query 45820 GCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTA 45879 | | || ||||| |||||||||| || | | | ||| | || || || || | Sbjct 1677 GGTGGTCAGCGCCTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAA 1736 Query 45880 CGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGT 45939 | || ||||| ||||| | | | ||| | | ||| | | | ||||| | Sbjct 1737 CCTGTTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGG 1796 Query 45940 CGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGT 45999 || | || || || ||||||| |||||||| ||||| |||||| |||| || ||||| Sbjct 1797 TGACATCTTCCTCGGTGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGT 1856 Query 46000 TGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059 || || || ||| | || ||||| || | || || |||| || | Sbjct 1857 GGCGCAGGCCACCGGCCTGGGCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCT 1916 Query 46060 GTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCC 46119 |||| || || | || || || ||||||| |||| || |||||| ||||||| Sbjct 1917 GTACTCGAACCACTTCGAGCAGGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCC 1976 Query 46120 GAAGCTCGTGATCAAA--CGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTT 46177 || ||| ||| | || |||| | ||| | | || | || | | ||| || | Sbjct 1977 GACGCT-GTGGTTGAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATC 2034 Query 46178 GAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 | | ||| || ||||||||||||||||| ||||| || || | || |||| Sbjct 2035 CGCATCGACGGGTACGACCCGCACCCGGCGATCAAGGCGCCGGTGGCGGTATGAG 2089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157727665801104