Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq2486 181 3e-41 seq7345 91.5 4e-14 >seq2486 Length=3064 Score = 181 bits (200), Expect = 3e-41 Identities = 279/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 7874 GGCGCGTTTACCGGTCGCCCGGTTGAGAAAGAAATCACCTGGACGCAAGGCGATaaaaaa 7933 || ||||| || || || || || ||||| || ||| ||||| ||| ||||| | || Sbjct 183 GGTGCGTTCACTGGCCGGCCAGTGGAGAAGGAGATCCGCTGGAAGCAGGGCGACGAGGAA 242 Query 7934 aTCACCGCGACCGTGTATGTTCGCCCGATGGGTTATCACACAGCAACGTCCGATGTGCTG 7993 | ||||| ||||||||||| || ||| |||||| || | || |||||| |||||| Sbjct 243 CTGACCGCCACCGTGTATGTGCGGCCGCTGGGTTTCCAGGCGGCGGTGTCCGACGTGCTG 302 Query 7994 GCTTTTGGTGGTAAGGTCGATGGTGTGGCAGGGCGTATCGCCGCATCCATCTGCGATGAA 8053 | ||| ||| || ||||| || || ||||| || ||||||||| || Sbjct 303 TCGGCCACGAACAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGCATCTGCGACGAG 362 Query 8054 CATGGTAAACCCATCTTCACCCCGGCTGACATTACTGGTGAGGCAGATCCTGAACGTGGT 8113 || || || || | |||||| || |||||||| || || || ||||| || || || Sbjct 363 CACGGCAAGGCCGTTTTCACCGTCGCGGACATTACGGGCGAAGCCGATCCGGAGCGCGGC 422 Query 8114 GCACTGGATGGCGGCCTGACGGTAGCACTGCTTCTGGCCATTCAGGAAGTTAACGATCTG 8173 || ||||| ||| |||| |||| || ||||| ||||||| || || ||| | ||| Sbjct 423 GCCCTGGACGGCAACCTGTCGGTGGCGCTGCTGATGGCCATCGGCGAGGTGAACAACCTG 482 Query 8174 GGAAAGACTTCGAGCTCAGCGCCGAAGACGAATTCTGGTGCGAGCTCGTCCTCAACGGAA 8233 ||||| || |||||| | | | || || || | ||||||||||| ||||| || || | Sbjct 483 GGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGGTCCTGAATGGGA 542 Query 8234 TCGGAGGCAGAACAATCGCCGAAGCGCGGGAAGTCCTC 8271 |||| ||| | | ||||| || || |||| |||| Sbjct 543 TCGGCGGCCGCAGCATCGCTGAGGCAATGGAATGCCTC 580 >seq7345 Length=15758 Score = 91.5 bits (100), Expect = 4e-14 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 14426 ATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCGCTA 14484 |||| |||||| ||| || | || | ||| |||||||||||| ||||| || |||||||| Sbjct 7857 ATCGCCGACACCATGCTGATCGCCG-GCTACACCGAGGTGATCGACGCGAAGCTGCGCTA 7915 Query 14485 CCCGAACACCGCGCTGCTCTACGTCGAATTCGACTCAAGCCAGTTCA 14531 ||||||||| || ||||| |||||||| ||| | || ||||||| Sbjct 7916 CCCGAACACGGCCCTGCTGTACGTCGAGTTCAGCGCAGAGCAGTTCA 7962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130131643375104