Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq7345 203 8e-48 >seq7345 Length=15758 Score = 203 bits (224), Expect = 8e-48 Identities = 717/1108 (65%), Gaps = 18/1108 (2%) Strand=Plus/Minus Query 3697 CGTAGGAGAATTTGCCGTCAATAACGTTGGCGCGGGTGTAGAC---AT--ACGTCA-TAT 3750 ||||| ||| |||||| || || ||||| | ||||||| | || ||||| | Sbjct 8433 CGTAGCTGAAGCGGCCGTCGATGACATTGGCCCTGGTGTAGGCGAAATCGACGTCGGTGG 8374 Query 3751 CGCGCGGCATATCCGCCAGCGCGGCCAGCTGATTACCGGCCCAGTATGTCATGCCGCGGA 3810 ||||||| ||||||||| | ||| || ||||||||| | ||| || ||| Sbjct 8373 CGCGCGGGATATCCGCCTGGATCTTCAGTTGGCCCTGGGCCCAGTACGCCATACCACGGT 8314 Query 3811 AGATGCTCGCCAGGTCGCGCAGCACCGTAAACGCCTCGTTCTGGCTCTGGATATACACGT 3870 |||| | ||||||||||||| | | ||| || |||| || | | || || Sbjct 8313 AGATAGCGGTGAGGTCGCGCAGCAGCTCCCAGGCCCCGGCGCGGCTTTGCAGGTTCAGGT 8254 Query 3871 CGCAGAGAAAACGTGGCTCAGTACCGCTGCCGCCGGTACCGTCCGGCACGGGCTGATCGC 3930 |||| || ||||| | | ||| || | || |||||||| ||| |||| Sbjct 8253 TGCAGGTGTGTCGCGGCTC----CTG--GCCACCCTTCCCATCCGGCACCAACTGGTCGC 8200 Query 3931 AGTGCTGCGCGATGCGGTAGAGTTCCCACTTGTCCACCTGCGTCGCATCCAGCCGGTCTC 3990 ||| ||| | || ||||| | ||||| ||| ||| | || | | || | | Sbjct 8199 AGTACTGGGAAATCCGGTACATCTCCCAACGGTCTACCATCCAGGCCTTGATGCGTTTAC 8140 Query 3991 CGATCCCGAAACGGTCACTTAGCACCAGGTCGTAAAACACCCATGCGGGATTATTGCTCC 4050 | | ||||| || || | ||| | |||||| ||| | || || | | ||| Sbjct 8139 CCACACCGAAGCGATCGTTGGTCACGATGTCGTAGGTGTGCCAGACCGGGTTGTCGGTCC 8080 Query 4051 AGGCCCATTTAAACGAGCCGTCCCAGGTGCCGGAATAGGTGCGCGCCACCGGATCGTATG 4110 ||||| ||| | || |||||||||| ||||| |||| || | | |||||||||| Sbjct 8079 AGGCCTGTTTCATCGTGCCGTCCCAGATGCCGAGGTAGGCCCGGGTCTCCGGATCGTAAT 8020 Query 4111 TCGTGGGCACGCGGATTTGCCGCCCGCGGGCGCGTACGCTGATTTGCGGAATATTGCTGA 4170 | | ||||| ||| | |||||||||| | || ||| |||||| ||||||| Sbjct 8019 TGCTCGGCACTTGGACCTTCCGCCCGCGGCAGTCGACTGTGACAGCCGGAATGTTGCTGA 7960 Query 4171 ACTGCTTCGCGTTGAACGACACAAAGAGCAGCGCGGTGTTCGGGTAGCGCAGCTTTGCAT 4230 |||||| ||| ||||| || | ||||| || |||||||||||||||||||| || | Sbjct 7959 ACTGCTCTGCGCTGAACTCGACGTACAGCAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGT 7900 Query 4231 CGATGATTTCGGAATACGCTTCGATGTTCGTCGTATCCACGATGCGGCTGGAGGTGCTGT 4290 |||| | |||| || | |||| | | || || |||||||| || | | || Sbjct 7899 CGATCACCTCGGTGTAGCCGGCGATCAGCATGGTGTCGGCGATGCGGTTGTTGTTCTGGT 7840 Query 4291 CCGCCGTCGTCCGGCTCACACGAAGCTGCCAGCCGGTCCGGGCAGGCGGAAGGTCAATGC 4350 || |||| |||| || || | ||||||||| | ||| | ||| ||||| || | Sbjct 7839 TCGGCGTCAGGCGGCGGACGCGCACCTGCCAGCCATTGGTGGCCGCCGGCAGGTCGATCC 7780 Query 4351 GATGGCTGCGCTCATAGAGGGAGGTGGTTTTACCGTCGAACGCGCTGTTCAGCACTGCGA 4410 | || ||||| ||| ||| |||||| || || |||| || | |||||| | Sbjct 7779 GGCGGGAACGCTCGTAGCGGGTGGTGGTCTTGCCATCGACGGCCTCGCGCAGCACCTCCT 7720 Query 4411 CATACCCGCCGCCGTCTGTGGACAGTTCAATTTTGTATTCAACGCGGTAGCCCACCACAT 4470 ||| |||||||||| |||| ||| || | ||||| | ||||| || | | | Sbjct 7719 GATAGGCGCCGCCGTCGGTGGCCAGATCTACGGCATATTCGATCCGGTACCCGCCGATGT 7660 Query 4471 CCCCGTTGTCCTTCATGC-GCTGCAGTGAAGGCACACCGAGACGCACCCGGACCGCAGAG 4529 |||||| || ||| |||| || | ||| ||| |||| || || || || Sbjct 7659 TGCCGTTG-GTGTCCTGCTGCTGGAGCGCTGGCCAGGCGAAGCGCAGACGCACTGCGGAA 7601 Query 4530 AGCTGCGTATTGCTGATGGCACGCGTCCACGGCTGTGTGGCT-TTAAGCTGAGTGTTAAC 4588 ||||| ||||||| | | ||| ||| ||| || | ||| | || ||| || Sbjct 7600 AGCTGGATATTGCTCAGCGAGCGCACCCAGGGC-GTATCGCTGCGCAACTCGACGTTGAC 7542 Query 4589 GGTGATTTCATTTTCCACCGACGGTATGCCGGGAATGTAATCCTGCGTCTGGGTACCCGG 4648 | | || || || |||| || ||||| || || || ||||| | | |||| Sbjct 7541 AGACGTCTCGTTCTCAACCGCAGGAATGCCAGGGATATAGTCCTGGTCCACCGACCCCGC 7482 Query 4649 ACGAAATTCCCATTTCACATCGGGAAAATTAAGCGTGCCG-TCGGCGCTGCGGATCGGGG 4707 || | ||||| || || | || || || || | ||| |||| | | ||||| Sbjct 7481 GCGCCACTCCCACTTAACGTTCGGGAAGTTCAGGTTACCGCTCGG-GTCCATCAGCGGGG 7423 Query 4708 TACCGTCGAGGAAAATATCTTTATCCGTCAGGCCGCCGGCGAACTCCCCCTCGCCCAGCG 4767 | ||||||| | ||||| || || | ||||||||||||| || ||||||| | Sbjct 7422 TGTTGTCGAGGTAGATATCGCGCTCGCTCGGAACGCCGGCGAACTCGCCTTCGCCCACGG 7363 Query 4768 CCAGCAGTATTTTGGCCGTCGCGATCGA 4795 | ||||| || |||||| |||||| ||| Sbjct 7362 CGAGCAGAATCTTGGCCATCGCGACCGA 7335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124698826438368