Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 89.7 4e-13
seq7200 82.4 6e-11
>seq6771
Length=7421
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
||||| || || |||||||| | || |||||||| || ||| ||| ||| ||||
Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | | | || |||||| |||||||||||| | ||| ||||||
Sbjct 383 GATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAA 442
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||| | || || || || |||||||| | |||||| | ||| | | ||||| |||
Sbjct 443 CAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAAC 502
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
|| ||||| ||||| || || ||| | || || || | || |||||
Sbjct 503 ATCCAAAAGGAATCAACACTCCACTTAGTTTTGCGACTTCGCGGAGG 549
>seq7200
Length=105881
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| || || |||||||| || || || |||||||| ||| || | ||
Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| ||| | | || |||| || |||| || || || || ||| | || ||||||
Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAG-GATAAGGAAGGAATCCCTCCAGATCA 105715
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730
|||||| | |||||||| || ||||| |||||||| || | ||| | | || ||
Sbjct 105716 ACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTT--CTGACTAC 105773
Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|| ||||| |||||||| || |||| ||||
Sbjct 105774 AATATTCAGAAAGAATCAACCTTGCATTTGGT 105805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425341879439544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |