Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 159 2e-33
seq10579 132 3e-25
seq10855 113 3e-19
seq9711 102 5e-16
seq7200 96.9 2e-14
seq11428 91.5 1e-12
>seq6771
Length=7421
Score = 159 bits (176), Expect = 2e-33
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|||||||| || || |||||||| ||| ||| || | ||||| || | ||||||
Sbjct 315 CGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTT 256
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
||| |||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||
Sbjct 255 CTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCT 196
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|| |||||||| ||||| ||||||| || ||||| || | | | ||| |||
Sbjct 195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGG 136
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||||||||| |||||||| || ||||| || ||
Sbjct 135 GTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTG 98
Score = 123 bits (136), Expect = 2e-22
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| ||||| | ||||| ||| ||||||||| || || ||||| ||||| ||||| |||
Sbjct 501 TTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGT 442
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| || |||||||| || ||||| || || || ||| || || ||||||||
Sbjct 441 TGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCC 382
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | | ||||||||| |||||||||||||||||||| || ||||| || ||
Sbjct 381 GAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTG 326
>seq10579
Length=342791
Score = 132 bits (146), Expect = 3e-25
Identities = 118/148 (80%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786
||||| |||| || |||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 110108 AGTAAAAAATGCTGTTATTACTGTGCCAGCATATTTTAATGATTCACAACGACAAGCGAC 110049
Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846
|||||||| || |||||| || | ||||| | ||| | ||||| |||||||| ||
Sbjct 110048 AAAAGATGCTGGTCAAATTGCTGGATTAAATGTGCTTCGTGTAATTAACGAACCAACCGC 109989
Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAG 474874
||| ||||||||||| || | ||||||
Sbjct 109988 AGCTGCACTTGCTTACGGCATGGATAAG 109961
>seq10855
Length=168727
Score = 113 bits (124), Expect = 3e-19
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159
|||||||| ||| || ||||| |||||||||||| | ||||||||||| ||||| |||
Sbjct 26445 GATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTGGGACACTTGAGGTCTACGATA 26386
Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219
|||||||| | || ||| ||| |||| | ||| ||| || ||| | |||
Sbjct 26385 ATTGGTGACAGTATTGCGAGATTATTAGAATACTTAGGACTTGACGTGTTGAGACTCAAT 26326
Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261
||| | ||||| ||||| ||||| ||||||||||| || |||
Sbjct 26325 CATGTAGGTGACTGGGGTACACAGTTTGGTATGTTGATAGCA 26284
>seq9711
Length=151070
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| | |||||| || | ||| | || |||||| || || || || | || ||
Sbjct 104013 ACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGT 103954
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | |||||| ||||| |||||||| || || | | || ||||| ||||| |||||
Sbjct 103953 ACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCC 103894
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||| |||||||| || ||||||| |||||| || || | | | || | |||
Sbjct 103893 TTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAA 103834
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| ||||| || |||||||| ||||| ||||| ||
Sbjct 103833 -TGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTG 103795
>seq7200
Length=105881
Score = 96.9 bits (106), Expect = 2e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| | |||||| || | ||| | || |||||| || ||| || |||| || ||
Sbjct 105818 ACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGT 105759
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| |||||| || || ||||| ||||| || | | |||||||| ||||| |||||
Sbjct 105758 ACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCC 105699
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||| || ||||| || ||||||| ||| || || || | || | || || |||
Sbjct 105698 TTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAA 105639
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | || ||||||||||||||
Sbjct 105638 -TGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTG 105600
Score = 93.3 bits (102), Expect = 3e-13
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| |||||||| || |||||||| || | | ||| ||||| |||||||||||||||||
Sbjct 105295 TCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTA 105236
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736
|||||||| ||| |||||| ||| || || || | | | | || ||| || ||
Sbjct 105235 TCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAA-TGTGAT 105177
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || |||||||| || || ||||| ||
Sbjct 105176 GGTTTTTCCTGTGAGAGTTTTGACAAAAATCTG 105144
Score = 87.8 bits (96), Expect = 1e-11
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATG-AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
||| | ||| || || | ||| ||| | || |||| ||| ||||||||| | ||||
Sbjct 105134 ACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAAT-ATTATAATCTGAGAGAG 105076
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | ||| |||||||||||||||||||| || | | || ||||| || || || |
Sbjct 105075 TACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGC 105016
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714
|||| || |||||||| || ||||||| ||||| |||||||
Sbjct 105015 CTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAG 104971
>seq11428
Length=72031
Score = 91.5 bits (100), Expect = 1e-12
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 474671 TCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG-T 474729
||||| ||||| || | || ||||| | || ||| | || || || ||||| |
Sbjct 20543 TCTTCCATGGTCCTAACGAAGATGAAGGAGACGGCGGAGGCTTACCTGGG-CAAGACTAT 20485
Query 474730 AACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAA 474789
||| | ||||| || || || || || || || ||||| ||||| | || ||||||||
Sbjct 20484 AACGAACGCAGTCATCACAGTACCGGCTTACTTCAATGACTCTCAGAGGCAGGCAACTAA 20425
Query 474790 AGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGC 474849
|||||| || ||||| ||||| ||||| | | || || || || || || || ||
Sbjct 20424 AGATGCCGGCGCTATTGCTGGTCTGAATGTCCTCAGGATAATAAACGAGCCCACGGCCGC 20365
Query 474850 CGCACTTGCTTATGGTCTTGATAAGAA 474876
||| | || ||||||||||| |||||
Sbjct 20364 CGCGATAGCGTATGGTCTTGACAAGAA 20338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267658628076128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |