Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6771 159 2e-33 seq10579 132 3e-25 seq10855 113 3e-19 seq9711 102 5e-16 seq7200 96.9 2e-14 seq11428 91.5 1e-12 >seq6771 Length=7421 Score = 159 bits (176), Expect = 2e-33 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || |||||||| ||| ||| || | ||||| || | |||||| Sbjct 315 CGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTT 256 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 ||| |||||||||||| || ||||||||||| ||||| || ||||| |||||||| ||| Sbjct 255 CTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCT 196 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || |||||||| ||||| ||||||| || ||||| || | | | ||| ||| Sbjct 195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGG 136 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||||||||| |||||||| || ||||| || || Sbjct 135 GTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTG 98 Score = 123 bits (136), Expect = 2e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| ||| ||||||||| || || ||||| ||||| ||||| ||| Sbjct 501 TTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGT 442 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || |||||||| || ||||| || || || ||| || || |||||||| Sbjct 441 TGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCC 382 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||||||||| |||||||||||||||||||| || ||||| || || Sbjct 381 GAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTG 326 >seq10579 Length=342791 Score = 132 bits (146), Expect = 3e-25 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||||| |||| || |||||||| |||||||||||||||||||| ||||| ||||| || Sbjct 110108 AGTAAAAAATGCTGTTATTACTGTGCCAGCATATTTTAATGATTCACAACGACAAGCGAC 110049 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 |||||||| || |||||| || | ||||| | ||| | ||||| |||||||| || Sbjct 110048 AAAAGATGCTGGTCAAATTGCTGGATTAAATGTGCTTCGTGTAATTAACGAACCAACCGC 109989 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAG 474874 ||| ||||||||||| || | |||||| Sbjct 109988 AGCTGCACTTGCTTACGGCATGGATAAG 109961 >seq10855 Length=168727 Score = 113 bits (124), Expect = 3e-19 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| ||| || ||||| |||||||||||| | ||||||||||| ||||| ||| Sbjct 26445 GATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTGGGACACTTGAGGTCTACGATA 26386 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 |||||||| | || ||| ||| |||| | ||| ||| || ||| | ||| Sbjct 26385 ATTGGTGACAGTATTGCGAGATTATTAGAATACTTAGGACTTGACGTGTTGAGACTCAAT 26326 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCA 817261 ||| | ||||| ||||| ||||| ||||||||||| || ||| Sbjct 26325 CATGTAGGTGACTGGGGTACACAGTTTGGTATGTTGATAGCA 26284 >seq9711 Length=151070 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| | |||||| || | ||| | || |||||| || || || || | || || Sbjct 104013 ACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGT 103954 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| ||||| |||||||| || || | | || ||||| ||||| ||||| Sbjct 103953 ACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCC 103894 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| |||||||| || ||||||| |||||| || || | | | || | ||| Sbjct 103893 TTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAA 103834 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| || |||||||| ||||| ||||| || Sbjct 103833 -TGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTG 103795 >seq7200 Length=105881 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| | |||||| || | ||| | || |||||| || ||| || |||| || || Sbjct 105818 ACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGT 105759 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || || ||||| ||||| || | | |||||||| ||||| ||||| Sbjct 105758 ACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCC 105699 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || ||||| || ||||||| ||| || || || | || | || || ||| Sbjct 105698 TTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAA 105639 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | || |||||||||||||| Sbjct 105638 -TGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTG 105600 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || |||||||| || |||||||| || | | ||| ||||| ||||||||||||||||| Sbjct 105295 TCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTA 105236 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 |||||||| ||| |||||| ||| || || || | | | | || ||| || || Sbjct 105235 TCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAA-TGTGAT 105177 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || |||||||| || || ||||| || Sbjct 105176 GGTTTTTCCTGTGAGAGTTTTGACAAAAATCTG 105144 Score = 87.8 bits (96), Expect = 1e-11 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG-AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||| | ||| || || | ||| ||| | || |||| ||| ||||||||| | |||| Sbjct 105134 ACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAAT-ATTATAATCTGAGAGAG 105076 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | ||| |||||||||||||||||||| || | | || ||||| || || || | Sbjct 105075 TACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGC 105016 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||| || |||||||| || ||||||| ||||| ||||||| Sbjct 105015 CTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAG 104971 >seq11428 Length=72031 Score = 91.5 bits (100), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 474671 TCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG-T 474729 ||||| ||||| || | || ||||| | || ||| | || || || ||||| | Sbjct 20543 TCTTCCATGGTCCTAACGAAGATGAAGGAGACGGCGGAGGCTTACCTGGG-CAAGACTAT 20485 Query 474730 AACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAA 474789 ||| | ||||| || || || || || || || ||||| ||||| | || |||||||| Sbjct 20484 AACGAACGCAGTCATCACAGTACCGGCTTACTTCAATGACTCTCAGAGGCAGGCAACTAA 20425 Query 474790 AGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGC 474849 |||||| || ||||| ||||| ||||| | | || || || || || || || || Sbjct 20424 AGATGCCGGCGCTATTGCTGGTCTGAATGTCCTCAGGATAATAAACGAGCCCACGGCCGC 20365 Query 474850 CGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| | || ||||||||||| ||||| Sbjct 20364 CGCGATAGCGTATGGTCTTGACAAGAA 20338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267658628076128