Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10234 118 1e-21 >seq10234 Length=192330 Score = 118 bits (130), Expect = 1e-21 Identities = 241/352 (68%), Gaps = 12/352 (3%) Strand=Plus/Minus Query 75874 TGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAA 75933 ||| |||| || ||||||| ||| || |||||||||||||| ||||||||||| || Sbjct 2808 TGTATGGATCGCCATTCTCAGATCCCAAGTAGAGACTGGAACACCTTATATGCTTTATAA 2749 Query 75934 GGATGCTTGTAA-CAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 ||| ||||| | | || | || || || || | || || ||||| | |||| Sbjct 2748 AGATCAATGTAATCGAAAATCG-AATCACCAGCATATAGGCACTATCAAATGTAGCAATC 2690 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG--GCTGTTTGCAATTTGGC 76050 | || || |||||| | || || | | | | |||| | ||||| |||||||| || Sbjct 2689 TGTGTACTGAAATTGTTGAATATTCTGGTCCTG--GAGAAGTTGCTGTGTGCAATTTAGC 2632 Query 76051 ATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT 76110 ||| || || | | || ||| ||| ||| || |||||||||| ||| ||||| Sbjct 2631 ATCTATTGCTGTCAACATGTTTGTTAATACAGATACCAAGACTTTTGATTTTGATAAACT 2572 Query 76111 TCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTA 76170 | | | || |||| ||||| ||| |||||| | |||||||||| |||||||| Sbjct 2571 TAAAACAGTCGCAAAAATTGTCACCCGCAATCTAGATAAAGTCATTGACGTTAATTTTTA 2512 Query 76171 TCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGT 76219 ||| | |||| || || |||||| ||||||||||||||||| Sbjct 2511 TCCTATCCCAGAGA---CGAAAACATCTAATCAAAGACACAGACCTATTGGT 2463 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 ||||| || ||||| |||||||| ||||| || ||||| || || || ||||| |||| | Sbjct 1988 CTTTTAATAGCACCTATGCCAACGGCCTCGACGGCACAGATTTTAGGGAATAACGAATCC 1929 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 ||||||| ||||| | || |||||| |||| | | | || ||||||||||| Sbjct 1928 ATTGAACCGTACACGAGCAATATCTACGTGAGGCGCGTATTATCTGGAGAGTTTGTCATC 1869 Query 76622 GTCAA 76626 ||||| Sbjct 1868 GTCAA 1864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596479100391680