Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 161 2e-34
seq7200 158 2e-33
seq6771 140 6e-28
>seq9711
Length=151070
Score = 161 bits (178), Expect = 2e-34
Identities = 178/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | ||| || || |||| |||||| || | ||||| ||| ||
Sbjct 104028 AATTTGCATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTT 103969
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|||||||| | || | ||| || | ||||||||| || || ||||||||||| ||
Sbjct 103968 GTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTG 103909
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| |||||||| |||||||| ||||||| ||| | |||| ||| || || ||
Sbjct 103908 ATCCGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGA 103849
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| ||||| || | || || ||||| || || || ||||| ||||| || |||||
Sbjct 103848 AGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193
|||||||| | ||||||||| || || | ||| | ||||| |||||| ||||||||
Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415
Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253
|| |||| || || | |||||| || || ||||| | ||| || ||||| |||||
Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355
Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313
|| || ||||| ||||| ||||| | || | || || || || |||| ||| ||
Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295
Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||||||||| || |||| || || |||||||| |||||
Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 93.3 bits (102), Expect = 8e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|||| ||| || |||| |||||| ||| || ||||| || | || | | ||| ||
Sbjct 103772 ACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGACCATCTTCC 103713
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267
| |||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 103712 AGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATC 103657
>seq7200
Length=105881
Score = 158 bits (174), Expect = 2e-33
Identities = 177/237 (75%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | ||| || || |||| |||||| || | ||||| ||||||
Sbjct 105833 AATTTGCATACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATT 105774
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || | || | | ||| || | |||||||||||||| ||||| ||||||||
Sbjct 105773 GTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTG 105714
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| ||||| |||||||| ||||| || ||||||| ||| | |||| || || || ||
Sbjct 105713 ATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGA 105654
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| ||||||||| | || || || || || || | ||||| || || ||||||||
Sbjct 105653 TGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
Score = 147 bits (162), Expect = 4e-30
Identities = 171/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| | ||| ||||| |||| |||||| || | || || ||||||||| ||
Sbjct 105142 ATTCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCT 105083
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
|| | || | | ||| || | ||| ||||| ||||| || |||||||| ||||| ||
Sbjct 105082 GAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGT 105023
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || |||||||||||||| ||||| | ||| | ||| ||| ||||| |||| |||
Sbjct 105022 GGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCT 104963
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || | ||| || || || || || || ||||| ||||| || ||||||
Sbjct 104962 ACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
>seq6771
Length=7421
Score = 140 bits (154), Expect = 6e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || |||||||| | |||| || || || ||||||||||| | ||||| |
Sbjct 309 CGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCA 250
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||| || |||||||||| | ||| ||||| ||||| || ||||||||
Sbjct 249 TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTG 190
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| ||||| || |||| |||||||| || || |||
Sbjct 189 TCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATA 130
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || |||||||| || || |||||
Sbjct 129 GTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||| || || ||||||| | ||||||||| || || ||||| ||||| || || |||
Sbjct 468 TGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATT 409
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | ||| | || |||||||| |||| |||||||| || || |||||||||||
Sbjct 408 TTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCG 349
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || |||||
Sbjct 348 GTGAGAGTTTTTACGAAGATCTGCAT 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899517922427520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |