Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq9711 161 2e-34 seq7200 158 2e-33 seq6771 140 6e-28 >seq9711 Length=151070 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | ||| || || |||| |||||| || | ||||| ||| || Sbjct 104028 AATTTGCATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTT 103969 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | || | ||| || | ||||||||| || || ||||||||||| || Sbjct 103968 GTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTG 103909 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| |||||||| |||||||| ||||||| ||| | |||| ||| || || || Sbjct 103908 ATCCGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGA 103849 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 103848 AGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | ||||||||| || || | ||| | ||||| |||||| |||||||| Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||| || || | |||||| || || ||||| | ||| || ||||| ||||| Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || ||||| ||||| ||||| | || | || || || || |||| ||| || Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||||||||| || |||| || || |||||||| ||||| Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||| || |||| |||||| ||| || ||||| || | || | | ||| || Sbjct 103772 ACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGACCATCTTCC 103713 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 | |||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 103712 AGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATC 103657 >seq7200 Length=105881 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | ||| || || |||| |||||| || | ||||| |||||| Sbjct 105833 AATTTGCATACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATT 105774 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| || | |||||||||||||| ||||| |||||||| Sbjct 105773 GTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTG 105714 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| |||||||| ||||| || ||||||| ||| | |||| || || || || Sbjct 105713 ATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGA 105654 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | || || || || || || | ||||| || || |||||||| Sbjct 105653 TGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| ||||| |||| |||||| || | || || ||||||||| || Sbjct 105142 ATTCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCT 105083 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | ||| ||||| ||||| || |||||||| ||||| || Sbjct 105082 GAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGT 105023 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||| | ||| ||| ||||| |||| ||| Sbjct 105022 GGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCT 104963 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||| || || || || || || ||||| ||||| || |||||| Sbjct 104962 ACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 >seq6771 Length=7421 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||| | |||| || || || ||||||||||| | ||||| | Sbjct 309 CGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCA 250 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || |||||||||| | ||| ||||| ||||| || |||||||| Sbjct 249 TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTG 190 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||| | ||| ||||| || |||| |||||||| || || ||| Sbjct 189 TCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATA 130 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || |||||||| || || ||||| Sbjct 129 GTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || || ||||||| | ||||||||| || || ||||| ||||| || || ||| Sbjct 468 TGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATT 409 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | || |||||||| |||| |||||||| || || ||||||||||| Sbjct 408 TTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCG 349 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || ||||| Sbjct 348 GTGAGAGTTTTTACGAAGATCTGCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899517922427520