Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7200 134 2e-26 seq6771 107 3e-18 seq9711 104 3e-17 seq10678 84.2 3e-11 >seq7200 Length=105881 Score = 134 bits (148), Expect = 2e-26 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| ||||||| |||||||||| || || || || || || || | ||| Sbjct 104912 AATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTC 104971 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || ||| ||||| ||||||||||||||||| || ||||| || Sbjct 104972 TGATACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGATCA 105031 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||| || ||||| || || ||| | ||| | ||||||||||| Sbjct 105032 GCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTATAA 105091 Query 156002 TATATCCAAAG 156012 ||| || |||| Sbjct 105092 TAT-TCAAAAG 105101 Score = 120 bits (132), Expect = 4e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||||||||||||||| || |||||||| ||||| || | || Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| || ||||| ||||| || |||||||| ||| Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || || || | |||||| || ||||| |||||| Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGAT 105752 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||||||||| ||||| || || ||||| || || |||| || Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| ||||| || ||||| ||||| || || || || || Sbjct 105429 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 105488 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| |||||||| || || | | || | ||||||||||| Sbjct 105489 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 105548 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | ||| | |||||||| Sbjct 105549 ATTCAAAAAGAATCAACGTTGCATTTAGT 105577 Score = 109 bits (120), Expect = 8e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| | || |||||||| || ||||| |||||||| | ||| Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || |||||| ||| ||||| |||||||| ||||| || ||||| || || Sbjct 105200 GGACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 105259 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||| || || || || || || | || | || ||||| || Sbjct 105260 GCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAA 105319 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | ||| | |||||||| Sbjct 105320 CATTCAAAAAGAATCAACGTTGCATTTAGT 105349 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || | || || || | |||| Sbjct 104685 ATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCT 104744 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| || || || || ||||||||||| || || || || Sbjct 104745 GACACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCTGACCAG 104804 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || || ||||| ||||| | || || || || || | Sbjct 104805 CAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTACA-- 104862 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| || |||| ||||| || || | ||||| | ||||| Sbjct 104863 ATATCCAAAAGGAATCGACTCTTCACTTGGTTCTTCGATTACGTGGCGG 104911 >seq6771 Length=7421 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | ||||| |||||||| || | ||||| |||| ||| Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||| || ||||| ||||||||||| |||||||| || Sbjct 155 GACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 214 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| ||| || || || || |||||| ||||||| | || || ||||| Sbjct 215 CAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAAC 274 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || || | ||||||||| Sbjct 275 ATCCAGAAGGAATCTACGCTTCAT 298 >seq9711 Length=151070 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||| || || ||||| || || |||| || Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| ||||| || ||||| ||||| || || || || || Sbjct 104080 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 104139 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| |||||||| || || | | || | ||||||||||| Sbjct 104140 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 104199 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| | || || |||||||| || || Sbjct 104200 ATTCAGAAAGAATCCACTCTGCATTTAGTTTTGAG 104234 >seq10678 Length=68604 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 ||||||| | || || | |||||| ||||| || | || ||||| | |||| ||||| Sbjct 45931 CTTCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTT 45872 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACG 18299 | ||||||||||||| ||| ||||| | ||||| |||||||| || |||||| | Sbjct 45871 TCAGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATG 45812 Query 18300 CTATTA 18305 | |||| Sbjct 45811 CGATTA 45806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731760975017600