Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 141 2e-28
seq9711 140 6e-28
seq6771 122 2e-22
seq10678 96.9 7e-15
seq9876 84.2 4e-11
>seq7200
Length=105881
Score = 141 bits (156), Expect = 2e-28
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|| ||||| | | ||| | || ||||| || || | || ||| || |||||||||||
Sbjct 105142 ATTCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGA-ATATTATAATC 105084
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
|| | || || |||| || | ||| || ||||||||||| |||||||| ||||| ||
Sbjct 105083 TGAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGG 105024
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
||| || |||||||||||||| ||||| ||| ||||| || | ||| || | ||
Sbjct 105023 TGGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTC 104964
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||| || | ||| ||||| || ||||| | ||||||| ||| |||||||||
Sbjct 104963 TACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
Score = 136 bits (150), Expect = 8e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | | ||| | || ||||| || || | ||||| ||||| || |||
Sbjct 105826 ATACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCA 105767
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || |||| |||| ||||| || ||||||||||| ||||||||||| ||
Sbjct 105766 GAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGA 105707
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| ||||| || ||||| ||| ||||| || | || || | ||
Sbjct 105706 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCA 105647
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | |||||||| || ||||| |||||||||| || || |||||
Sbjct 105646 ACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
Score = 120 bits (132), Expect = 6e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | | || | |||||||| || || | ||||| || || ||||||
Sbjct 105370 ATACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCA 105311
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || | || || | |||||| ||||||||||| ||||| || ||||| ||
Sbjct 105310 GAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGA 105251
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| |||||||| ||||| ||| || || || | || || | ||
Sbjct 105250 GGAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCG 105191
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | || |||||||| || || | ||||| | ||| |||||||||
Sbjct 105190 ACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140
Score = 100 bits (110), Expect = 6e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||| || ||||| || || ||| | || || | ||||| ||||||||||| || |
Sbjct 104867 GATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACG 104808
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| || |||||||| || |||||||| || || || || ||| || || ||||
Sbjct 104807 CTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGT 104748
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| || | || || || ||||| ||||| || ||||| || || || | || |||||
Sbjct 104747 GTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTG 104688
Query 192534 CAT 192536
|||
Sbjct 104687 CAT 104685
>seq9711
Length=151070
Score = 140 bits (154), Expect = 6e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | | ||| | || ||||| || || | ||||| || || || ||
Sbjct 104021 ATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCG 103962
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || |||| |||| |||||| ||||| |||||||||||||| ||||| ||
Sbjct 103961 GAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGA 103902
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| |||||||| ||||| ||| ||||| || | || || | |||
Sbjct 103901 GGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 103842
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || | ||||||||||| ||||| | ||||||| ||| ||||||||
Sbjct 103841 ACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 107 bits (118), Expect = 4e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||||||||| || | ||| | || | || | ||||| ||||| || || ||
Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
|| |||||| | || || | |||||| ||||| || || | ||| || ||||| || ||
Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| || ||||| ||||| ||||| || || || || | || || | || ||
Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || ||||| |||||||| || || | ||||||||||||
Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 104 bits (114), Expect = 5e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||| | || || |||||||| |||| |||||| || || || ||
Sbjct 103793 ATACCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCT 103734
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | ||| || |||| |||| ||||| || ||||||||||| ||||||||||| ||
Sbjct 103733 GAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGA 103674
Query 192427 GGTATTCCTTCTTTATC 192443
|| |||||||| |||||
Sbjct 103673 GGGATTCCTTCCTTATC 103657
>seq6771
Length=7421
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || | |||||| | || | ||| | |||| || || ||| ||||| ||
Sbjct 324 ATGCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCG 265
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| |||| || | |||||| |||||||| |||| | ||| ||||| ||
Sbjct 264 GAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGA 205
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| ||||| || ||| ||| ||||| ||||| ||||| | |||
Sbjct 204 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCA 145
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| || || || ||||||||||| | ||||| | || ||||||||
Sbjct 144 ACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
>seq10678
Length=68604
Score = 96.9 bits (106), Expect = 7e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 49848 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 49907
|| |||| || || | ||| || |||||||| | |||||||| | ||||| |||||
Sbjct 45929 TCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTTTC 45870
Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967
||||||||||| | ||||||||| | ||||| ||||||||||| ||| |||||
Sbjct 45869 AGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATGCG 45810
Query 49968 ATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCt 50027
|||| | | || ||| | | |||| |||||||| | ||||||| |||
Sbjct 45809 ATTACACGTTCTGGGAACGTAGCACTCTCATGATTGATCCAATTCAATGCCCAATTAGCT 45750
Query 50028 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068
|| ||| | |||||| | | || || || ||||||||
Sbjct 45749 TTCTTTCCTACAGAAGGAAGCGTCTCAATCGCATTAAATAA 45709
>seq9876
Length=23795
Score = 84.2 bits (92), Expect = 4e-11
Identities = 97/128 (76%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
||| |||| | || || || ||||||||||||| || ||| || || || || || |
Sbjct 12956 ACCGCCTCGCAAGCGCAACACCAAATGTAAAGTAGATTCCTTTTGA-ATGTTGTAGTCCG 12898
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| ||||| | |||| |||||||| || ||||||||||| ||||| || ||||| || |
Sbjct 12897 ACAATGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCG 12838
Query 192428 GTATTCCT 192435
| ||||||
Sbjct 12837 GAATTCCT 12830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984326920743600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |