Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7200 141 2e-28 seq9711 140 6e-28 seq6771 122 2e-22 seq10678 96.9 7e-15 seq9876 84.2 4e-11 >seq7200 Length=105881 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | | ||| | || ||||| || || | || ||| || ||||||||||| Sbjct 105142 ATTCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGA-ATATTATAATC 105084 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 105083 TGAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGG 105024 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || |||||||||||||| ||||| ||| ||||| || | ||| || | || Sbjct 105023 TGGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTC 104964 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| || | ||| ||||| || ||||| | ||||||| ||| ||||||||| Sbjct 104963 TACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| | || ||||| || || | ||||| ||||| || ||| Sbjct 105826 ATACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCA 105767 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| || ||||||||||| ||||||||||| || Sbjct 105766 GAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGA 105707 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || ||||| ||| ||||| || | || || | || Sbjct 105706 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCA 105647 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || ||||| |||||||||| || || ||||| Sbjct 105646 ACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 Score = 120 bits (132), Expect = 6e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | || | |||||||| || || | ||||| || || |||||| Sbjct 105370 ATACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCA 105311 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || | || || | |||||| ||||||||||| ||||| || ||||| || Sbjct 105310 GAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGA 105251 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| ||||| ||| || || || | || || | || Sbjct 105250 GGAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCG 105191 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || |||||||| || || | ||||| | ||| ||||||||| Sbjct 105190 ACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || ||||| || || ||| | || || | ||||| ||||||||||| || | Sbjct 104867 GATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACG 104808 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || |||||||| || || || || ||| || || |||| Sbjct 104807 CTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGT 104748 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | || || || ||||| ||||| || ||||| || || || | || ||||| Sbjct 104747 GTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTG 104688 Query 192534 CAT 192536 ||| Sbjct 104687 CAT 104685 >seq9711 Length=151070 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| | || ||||| || || | ||||| || || || || Sbjct 104021 ATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCG 103962 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| |||||| ||||| |||||||||||||| ||||| || Sbjct 103961 GAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGA 103902 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| ||||| ||| ||||| || | || || | ||| Sbjct 103901 GGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 103842 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| ||||| | ||||||| ||| |||||||| Sbjct 103841 ACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| || | ||| | || | || | ||||| ||||| || || || Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||||| | || || | |||||| ||||| || || | ||| || ||||| || || Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||| ||||| ||||| || || || || | || || | || || Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| |||||||| || || | |||||||||||| Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | || || |||||||| |||| |||||| || || || || Sbjct 103793 ATACCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCT 103734 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| || ||||||||||| ||||||||||| || Sbjct 103733 GAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGA 103674 Query 192427 GGTATTCCTTCTTTATC 192443 || |||||||| ||||| Sbjct 103673 GGGATTCCTTCCTTATC 103657 >seq6771 Length=7421 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | || | ||| | |||| || || ||| ||||| || Sbjct 324 ATGCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCG 265 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || | |||||| |||||||| |||| | ||| ||||| || Sbjct 264 GAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGA 205 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| ||| ||||| ||||| ||||| | ||| Sbjct 204 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCA 145 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||||||||| | ||||| | || |||||||| Sbjct 144 ACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq10678 Length=68604 Score = 96.9 bits (106), Expect = 7e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 49848 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 49907 || |||| || || | ||| || |||||||| | |||||||| | ||||| ||||| Sbjct 45929 TCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTTTC 45870 Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967 ||||||||||| | ||||||||| | ||||| ||||||||||| ||| ||||| Sbjct 45869 AGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATGCG 45810 Query 49968 ATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCt 50027 |||| | | || ||| | | |||| |||||||| | ||||||| ||| Sbjct 45809 ATTACACGTTCTGGGAACGTAGCACTCTCATGATTGATCCAATTCAATGCCCAATTAGCT 45750 Query 50028 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 || ||| | |||||| | | || || || |||||||| Sbjct 45749 TTCTTTCCTACAGAAGGAAGCGTCTCAATCGCATTAAATAA 45709 >seq9876 Length=23795 Score = 84.2 bits (92), Expect = 4e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||| |||| | || || || ||||||||||||| || ||| || || || || || | Sbjct 12956 ACCGCCTCGCAAGCGCAACACCAAATGTAAAGTAGATTCCTTTTGA-ATGTTGTAGTCCG 12898 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | ||||| | |||| |||||||| || ||||||||||| ||||| || ||||| || | Sbjct 12897 ACAATGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCG 12838 Query 192428 GTATTCCT 192435 | |||||| Sbjct 12837 GAATTCCT 12830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984326920743600