Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7200 131 3e-25 seq9711 122 2e-22 seq6771 122 2e-22 seq10678 96.9 6e-15 >seq7200 Length=105881 Score = 131 bits (144), Expect = 3e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| || || | || || ||||||||||||||| | || || | || || Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| || |||||||| || |||||||| || || ||||| || |||||||||||||| Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGA 105002 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 ||||| ||| ||||| || ||||| || | ||||| || | ||| ||||| || Sbjct 105001 ATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTT 104942 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||||||| || ||||||||| Sbjct 104941 CCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | |||||||| || || | ||||| ||| ||||||||| Sbjct 105598 ATACCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCT 105539 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || || || || || || || ||||| || || ||| Sbjct 105538 GAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGT 105479 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || ||||| ||| || || || || ||||||| ||| Sbjct 105478 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCA 105419 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || |||||||||| || || ||||| Sbjct 105418 ACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || || || | ||| |||| || | ||||| |||||||| || || | | Sbjct 104866 ATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGC 104807 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || |||||||| || || || || ||| || || ||||| Sbjct 104806 TGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTG 104747 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | || || || ||||| ||||| || ||||| || || || | ||| |||||| Sbjct 104746 TCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGC 104687 Query 172068 AT 172069 || Sbjct 104686 AT 104685 >seq9711 Length=151070 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||||||||| | ||| | || | || | ||||| |||||| || || || Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| |||| |||| || | |||||| ||||| ||||| | ||| || || || || || Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| ||||| ||||| || || || || || || || | || || Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| |||||||| || || | ||||||||||| Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || | || ||||| || || | ||||| ||| || || || Sbjct 104021 ATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCG 103962 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| |||||| ||||| || ||||||||||| || || || Sbjct 103961 GAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGA 103902 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| ||||| ||| ||||| || || || || | ||| Sbjct 103901 GGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 103842 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||||| ||||| | ||||||| || |||||||| Sbjct 103841 ACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| | || |||||||| | ||| | ||||| ||| ||||||||| Sbjct 104249 ATACCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCT 104190 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || || || || || || || ||||| || || ||| Sbjct 104189 GAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGT 104130 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || ||||| ||| || || || || ||||||| ||| Sbjct 104129 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCA 104070 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || || ||||| | ||| || ||||| Sbjct 104069 ACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 >seq6771 Length=7421 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || || | || || | || || | |||||| ||||||||||||| | | Sbjct 276 ATGTTATAGTCGGAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGC 217 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || |||||||| ||||| || ||| ||| ||||| |||||| Sbjct 216 TGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTG 157 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| | ||| ||||| || || || ||||||||||| | ||||| | ||| |||||| Sbjct 156 TCTGAAGCTTCAACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGC 97 Query 172068 AT 172069 || Sbjct 96 AT 95 >seq10678 Length=68604 Score = 96.9 bits (106), Expect = 6e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207 |||| |||| || || | ||| || |||||||| | |||||||| | ||||| |||| Sbjct 45931 CTTCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTT 45872 Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267 | ||||||||||| | ||||||||| | ||||| |||||||| || ||| |||| Sbjct 45871 TCAGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATG 45812 Query 39268 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTG 39327 | |||| | | || ||| | | |||| |||||||| | ||||||| | Sbjct 45811 CGATTACACGTTCTGGGAACGTAGCACTCTCATGATTGATCCAATTCAATGCCCAATTAG 45752 Query 39328 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 |||| ||| | |||||| | | || || || |||||||| Sbjct 45751 CTTTCTTTCCTACAGAAGGAAGCGTCTCAATCGCATTAAATAA 45709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904998690868800