Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 131 3e-25
seq9711 122 2e-22
seq6771 122 2e-22
seq10678 96.9 6e-15
>seq7200
Length=105881
Score = 131 bits (144), Expect = 3e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920
|| ||||| || || | || || ||||||||||||||| | || || | || ||
Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
| ||| || |||||||| || |||||||| || || ||||| || ||||||||||||||
Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGA 105002
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||| ||||| || ||||| || | ||||| || | ||| ||||| ||
Sbjct 105001 ATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTT 104942
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||||||| || |||||||||
Sbjct 104941 CCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | | || | |||||||| || || | ||||| ||| |||||||||
Sbjct 105598 ATACCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCT 105539
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| || | || || || || || || || ||||| || || |||
Sbjct 105538 GAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGT 105479
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| ||||| || ||||| ||| || || || || ||||||| |||
Sbjct 105478 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCA 105419
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | || ||||| || || || |||||||||| || || |||||
Sbjct 105418 ACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 104 bits (114), Expect = 4e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
||||| || || || || | ||| |||| || | ||||| |||||||| || || | |
Sbjct 104866 ATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGC 104807
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| ||||||||||| || |||||||| || || || || ||| || || |||||
Sbjct 104806 TGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTG 104747
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || | || || || ||||| ||||| || ||||| || || || | ||| ||||||
Sbjct 104746 TCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGC 104687
Query 172068 AT 172069
||
Sbjct 104686 AT 104685
>seq9711
Length=151070
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
|||||||||||||| | ||| | || | || | ||||| |||||| || || ||
Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|||| |||| |||| || | |||||| ||||| ||||| | ||| || || || || ||
Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| || ||||| ||||| ||||| || || || || || || || | || ||
Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || || ||||| |||||||| || || | |||||||||||
Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | | || | || ||||| || || | ||||| ||| || || ||
Sbjct 104021 ATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCG 103962
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || |||| |||||| ||||| || ||||||||||| || || ||
Sbjct 103961 GAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGA 103902
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| |||||||| ||||| ||| ||||| || || || || | |||
Sbjct 103901 GGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCA 103842
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||||||||||| ||||| | ||||||| || ||||||||
Sbjct 103841 ACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||| || | ||| | || |||||||| | ||| | ||||| ||| |||||||||
Sbjct 104249 ATACCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCT 104190
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| || | || || || || || || || ||||| || || |||
Sbjct 104189 GAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGT 104130
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| |||||||| ||||| || ||||| ||| || || || || ||||||| |||
Sbjct 104129 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCA 104070
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | || ||||| || || || || ||||| | ||| || |||||
Sbjct 104069 ACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
>seq6771
Length=7421
Score = 122 bits (134), Expect = 2e-22
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| ||||| || || | || || | || || | |||||| ||||||||||||| | |
Sbjct 276 ATGTTATAGTCGGAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGC 217
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
|| || || || || || |||||||| ||||| || ||| ||| ||||| ||||||
Sbjct 216 TGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTG 157
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
||||| | ||| ||||| || || || ||||||||||| | ||||| | ||| ||||||
Sbjct 156 TCTGAAGCTTCAACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGC 97
Query 172068 AT 172069
||
Sbjct 96 AT 95
>seq10678
Length=68604
Score = 96.9 bits (106), Expect = 6e-15
Identities = 155/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207
|||| |||| || || | ||| || |||||||| | |||||||| | ||||| ||||
Sbjct 45931 CTTCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTT 45872
Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267
| ||||||||||| | ||||||||| | ||||| |||||||| || ||| ||||
Sbjct 45871 TCAGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATG 45812
Query 39268 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTG 39327
| |||| | | || ||| | | |||| |||||||| | ||||||| |
Sbjct 45811 CGATTACACGTTCTGGGAACGTAGCACTCTCATGATTGATCCAATTCAATGCCCAATTAG 45752
Query 39328 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370
|||| ||| | |||||| | | || || || ||||||||
Sbjct 45751 CTTTCTTTCCTACAGAAGGAAGCGTCTCAATCGCATTAAATAA 45709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904998690868800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |