Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq3733 185 3e-42 >seq3733 Length=4163 Score = 185 bits (204), Expect = 3e-42 Identities = 219/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 40451 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40508 ||||||||| || | |||||| | |||||| ||| | || || | ||| ||||||| Sbjct 2461 CCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCG 2518 Query 40509 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCG 40568 ||||||| |||||||| |||||||| || || || ||||| |||||||| | || | Sbjct 2519 ATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTG 2578 Query 40569 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40628 | | ||||||||| |||||||||||| || | | || |||||||||||||| | Sbjct 2579 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 2638 Query 40629 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40688 || || || || || |||| | || ||| | | ||| |||| |||||||||| || Sbjct 2639 GAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 2698 Query 40689 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743 |||| |||||||| |||||||||||||| |||||| ||| || |||| ||| Sbjct 2699 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 2753 Score = 129 bits (142), Expect = 2e-25 Identities = 225/325 (69%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 39337 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39396 |||||| |||| || |||||| ||||||| || ||||| ||||||||| || || Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360 Query 39397 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39456 |||| || ||| |||| || || | ||||| ||||||||| ||||||| |||||| Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420 Query 39457 GGACCAGCACGTCCCACACTGCCTGGA---TGGCACCGTCCGAGTAG-CCTCGCTCGCGC 39512 ||| || ||| | | || | | |||| ||||| | | ||| | |||| Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCGTCCTTGGCTGCGC 1480 Query 39513 GCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATC 39572 || | ||||| || || | |||||||| | | ||| ||||||||||||| Sbjct 1481 CTTCGC----GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATC 1536 Query 39573 GCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTC 39632 || ||||| ||||||||||| || || | ||| ||| | | || |||||| | || | Sbjct 1537 GCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGC 1596 Query 39633 TGCACCTGCTCCTGGTAGATGATGA 39657 ||||||||||||||| | |||| Sbjct 1597 ATCACCTGCTCCTGGTATACCATGA 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163861181742048