Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021298.1
Length=51252
Score E
Sequences producing significant alignments: (Bits) Value
seq3733 185 3e-42
>seq3733
Length=4163
Score = 185 bits (204), Expect = 3e-42
Identities = 219/295 (74%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 40451 CCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCG 40508
||||||||| || | |||||| | |||||| ||| | || || | ||| |||||||
Sbjct 2461 CCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCG 2518
Query 40509 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCG 40568
||||||| |||||||| |||||||| || || || ||||| |||||||| | || |
Sbjct 2519 ATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTG 2578
Query 40569 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40628
| | ||||||||| |||||||||||| || | | || |||||||||||||| |
Sbjct 2579 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 2638
Query 40629 GAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40688
|| || || || || |||| | || ||| | | ||| |||| |||||||||| ||
Sbjct 2639 GAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 2698
Query 40689 ACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743
|||| |||||||| |||||||||||||| |||||| ||| || |||| |||
Sbjct 2699 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 2753
Score = 129 bits (142), Expect = 2e-25
Identities = 225/325 (69%), Gaps = 8/325 (2%)
Strand=Plus/Plus
Query 39337 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39396
|||||| |||| || |||||| ||||||| || ||||| ||||||||| || ||
Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360
Query 39397 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39456
|||| || ||| |||| || || | ||||| ||||||||| ||||||| ||||||
Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420
Query 39457 GGACCAGCACGTCCCACACTGCCTGGA---TGGCACCGTCCGAGTAG-CCTCGCTCGCGC 39512
||| || ||| | | || | | |||| ||||| | | ||| | ||||
Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCGTCCTTGGCTGCGC 1480
Query 39513 GCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATC 39572
|| | ||||| || || | |||||||| | | ||| |||||||||||||
Sbjct 1481 CTTCGC----GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATC 1536
Query 39573 GCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTC 39632
|| ||||| ||||||||||| || || | ||| ||| | | || |||||| | || |
Sbjct 1537 GCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGC 1596
Query 39633 TGCACCTGCTCCTGGTAGATGATGA 39657
||||||||||||||| | ||||
Sbjct 1597 ATCACCTGCTCCTGGTATACCATGA 1621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163861181742048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |