Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10515 113 1e-19 seq10946 96.9 1e-14 seq11245 95.1 4e-14 seq11679 87.8 5e-12 >seq10515 Length=106940 Score = 113 bits (124), Expect = 1e-19 Identities = 192/273 (70%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||||||||| |||||||| | ||||| || || ||| Sbjct 79516 TCCATAGCCTTTATCAAACGACGCTGAATGTAACCAGTCTCGGCCGTTTTCACGGCGGTA 79457 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| ||||| || |||||| | | ||| ||| ||| || || Sbjct 79456 TCGATGAGACCTTCACGACCTCCCATCGCGTGGAAGTAGAACTCAGACGG-CGTGAGACC 79398 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | | || ||||||| |||||||| | ||| || || ||||||| ||| | Sbjct 79397 AGCGAGATATGAATTCTCAACAAAACCACGGGACTCTGGTCCGTAATCGTC---TTTGAT 79341 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || |||||||| || || || |||| | || ||||| || || || || ||||| Sbjct 79340 GAAATGTGGCAGCGTTCTTTTACGGAAGCCAAAGGGTATACGTTTACCCTCGACATTCTG 79281 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | ||| | || | || || ||||| Sbjct 79280 TTGACCGACGCAAGCGATGACTTGAGAGATATT 79248 >seq10946 Length=154255 Score = 96.9 bits (106), Expect = 1e-14 Identities = 168/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || ||||| ||||| ||||| | ||||| || || ||||||||| | | Sbjct 130815 AAACAAATCTCTGACACGTCGGGCTCCCTGGCCAACGAGGATCTCATCAAATTCAGGACC 130756 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | ||| || | ||||| ||| ||||| || || ||||| | ||| | | |||||| Sbjct 130755 TGCTACATGGAAGAATGGAACACCAGCTTCTCCAGCGACTGCACGCGCTAACAATGTCTT 130696 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGA 289265 || ||||| || || || | || | |||||||| |||| ||| | ||| || || Sbjct 130695 TCCCGTTCCTGGCGGGCCGACCAACAATACTCCCTTCGGTAACTTTCCACCAAGGGCGGA 130636 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||| ||||| |||||||||||||||| | | | ||| || | |||||||| Sbjct 130635 ---AAATTTATCAGGATTCTTTAAAAATTCTACTACATTCAGAAGCTCTTGCTTTGCCTC 130579 Query 289326 ATC 289328 ||| Sbjct 130578 ATC 130576 >seq11245 Length=41035 Score = 95.1 bits (104), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 251830 TCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCG 251889 ||| ||| || |||||||||||||| || ||||| || ||||| || ||||| ||| Sbjct 8750 TCTATCAAGTGACCGATAGTCATACGAGAAGGGATAGCGTGAGGATTAATAATGATATCG 8809 Query 251890 GGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAATG-TTTCCAATA 251946 ||| | || || ||| || ||| |||||||| ||||| | || || |||| Sbjct 8810 GGTGTGAGGCCCTCACAAGAGAACGGCATATC---TTCCTGCCTGTACTGAATTCCGCAT 8866 Query 251947 GTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTA 252006 || ||||| |||||||||||||| ||| ||||| || || ||| || ||||| Sbjct 8867 GTACCCTTCTGTCCGTGACGAGACGCGAATTTATCTCCGATTTGTGGAATACGCACACTG 8926 Query 252007 CGAAGGCGAACCTTACAGAAGTTGTAACCATC 252038 || | |||| ||| ||||| || || || || Sbjct 8927 CGTACTCGAATCTTGCAGAATTTATATCCCTC 8958 >seq11679 Length=120097 Score = 87.8 bits (96), Expect = 5e-12 Identities = 142/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| ||||| || | | |||||| | || || || ||| || | Sbjct 99685 CCAACTGCATCAATTTCATCAATAAATAATATACACGGTGCATGTTTTCGCGCCATAGAG 99626 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | || | || | |||| ||| ||| |||| || | ||||| ||| | Sbjct 99625 AACATATCACGCACTCTAGAAGGACCAACACCCACAAACATCTCCAAGAATTCCGAACCT 99566 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 |||||| ||| || | |||||||||||| || ||| || | |||| | || ||| Sbjct 99565 GATACTGTAATAAAGGGTACATTTGCTTCACCAGCTGTAGCTTTAGCCAATAAAGTTTTA 99506 Query 289210 CCTGTTCCAGGTGGTCCCTCTAA 289232 || || ||||| || |||| ||| Sbjct 99505 CCAGTACCAGG-GGGCCCTGTAA 99484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471588743401832