Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3733 176 1e-39 >seq3733 Length=4163 Score = 176 bits (194), Expect = 1e-39 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 40199 CCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCG 40256 ||||||||| || | |||||| | ||| || ||| | || || | ||| ||||||| Sbjct 2461 CCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCG 2518 Query 40257 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCG 40316 ||||||| |||||||| |||||||| || || || |||||||||||||| | || | Sbjct 2519 ATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTG 2578 Query 40317 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40376 | | ||||||||| |||||||||||| || | | || |||||||||||||| | Sbjct 2579 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 2638 Query 40377 GAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40436 || || || || || |||| | || || | | ||| |||| |||||||||| || Sbjct 2639 GAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 2698 Query 40437 ACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491 |||| |||||||| |||||| ||||||| |||||| ||| || |||| ||| Sbjct 2699 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 2753 Score = 123 bits (136), Expect = 8e-24 Identities = 219/317 (69%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144 |||||| |||| || |||||| |||||||||| ||||| ||||| ||| || || Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360 Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204 |||| || ||| |||| || || | ||||| ||||||||| ||||||| ||||| Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420 Query 39205 GGACCAGCACGTCCCACACTGCCTGGA---TGGCACCGTCCGAGTAG-CCTCGCTCGCGC 39260 ||| || ||| | | || | | |||| ||||| | | ||| | |||| Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCGTCCTTGGCTGCGC 1480 Query 39261 GCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATC 39320 || | ||||| || || | |||||||| | | ||| ||||||||||||| Sbjct 1481 CTTCGC----GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATC 1536 Query 39321 GCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTC 39380 || ||||| ||||||||||| ||||| | ||| ||| | | || ||| || | || | Sbjct 1537 GCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGC 1596 Query 39381 TGCACCTGCTCCTGGTA 39397 ||||||||||||||| Sbjct 1597 ATCACCTGCTCCTGGTA 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163301262446448