Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq3733 176 1e-39
>seq3733
Length=4163
Score = 176 bits (194), Expect = 1e-39
Identities = 217/295 (74%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 40199 CCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCG 40256
||||||||| || | |||||| | ||| || ||| | || || | ||| |||||||
Sbjct 2461 CCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCG 2518
Query 40257 ATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCG 40316
||||||| |||||||| |||||||| || || || |||||||||||||| | || |
Sbjct 2519 ATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTG 2578
Query 40317 TGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCA 40376
| | ||||||||| |||||||||||| || | | || |||||||||||||| |
Sbjct 2579 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 2638
Query 40377 GAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCG 40436
|| || || || || |||| | || || | | ||| |||| |||||||||| ||
Sbjct 2639 GAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 2698
Query 40437 ACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTACT 40491
|||| |||||||| |||||| ||||||| |||||| ||| || |||| |||
Sbjct 2699 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 2753
Score = 123 bits (136), Expect = 8e-24
Identities = 219/317 (69%), Gaps = 8/317 (3%)
Strand=Plus/Plus
Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144
|||||| |||| || |||||| |||||||||| ||||| ||||| ||| || ||
Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360
Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204
|||| || ||| |||| || || | ||||| ||||||||| ||||||| |||||
Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420
Query 39205 GGACCAGCACGTCCCACACTGCCTGGA---TGGCACCGTCCGAGTAG-CCTCGCTCGCGC 39260
||| || ||| | | || | | |||| ||||| | | ||| | ||||
Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCGTCCTTGGCTGCGC 1480
Query 39261 GCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATC 39320
|| | ||||| || || | |||||||| | | ||| |||||||||||||
Sbjct 1481 CTTCGC----GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATC 1536
Query 39321 GCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTC 39380
|| ||||| ||||||||||| ||||| | ||| ||| | | || ||| || | || |
Sbjct 1537 GCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGC 1596
Query 39381 TGCACCTGCTCCTGGTA 39397
|||||||||||||||
Sbjct 1597 ATCACCTGCTCCTGGTA 1613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163301262446448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |