Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq3733 138 1e-27 >seq3733 Length=4163 Score = 138 bits (152), Expect = 1e-27 Identities = 240/346 (69%), Gaps = 5/346 (1%) Strand=Plus/Minus Query 104979 CGCGAGAAGTACTGGGCGCGTGTGGAGATGGAGGTCCGCACCATCACCAGCAAGAACTTC 105038 ||||| |||| | | ||| ||||| | ||| || |||||||| || | | |||| Sbjct 2778 CGCGAAGAGTATTTCGAGCGCCTGGAGTTCGAGCTCAACACCATCATCAAGATGGGCTTC 2719 Query 105039 GCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCATGCTC 105095 | || |||||| |||| ||||||| || | |||||| ||| ||| |||| | Sbjct 2718 CCGGGCTACTTCCTGATCGTGGCCGACTTCATCCAGTGGGGCAAGAACCAGGGCATCCCG 2659 Query 105096 GTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATCACC 105155 ||||||||||||||||||||| | || ||||| || ||| | || | |||||| Sbjct 2658 ATCGGTCCCGGCCGTGGTTCGGGTGCCGGTTCGCTGGTGGCGTGGGCGCTGAAGATCACC 2599 Query 105156 GAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGGAAG 105215 || || |||||| | |||| ||||| |||||||||| ||| || ||||| || | Sbjct 2598 GACCTGGACCCGCTGCCGTACAACCTGCTGTTCGAGCGCTTCCTCAATCCGGAACGCGTG 2539 Query 105216 AACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGACTA 105274 | |||||| |||| ||||||| | ||| | | || |||| ||| || ||||||| Sbjct 2538 TCGATGCCCGACTTCGACATCGACTT-CTGCATGGACCGCCGCGACGAAGTGATCGACTA 2480 Query 105275 CATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 | |||| | ||||| | ||| ||||| || |||| |||| Sbjct 2479 CGTCGCACGCAAGTACGGGCGCGAGCGCGTCAGCCAGATCATCACC 2434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456004413634880