Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq2842 181 2e-40 >seq2842 Length=3006 Score = 181 bits (200), Expect = 2e-40 Identities = 190/247 (77%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 98945 GAAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAA 99004 ||||| ||||| |||||||| || || | | |||||| |||||||| ||| | Sbjct 1344 GAAGAGCGACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGA 1403 Query 99005 CTTGCAAGAAGGTTTCCCGCTGGTAACGACCAAG-CGTTGCCACCTGCGCTCTATTATCC 99063 | | | ||||| ||||||||||| || |||||| | || ||||||||||| || |||| Sbjct 1404 CCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTG-CACCTGCGCTCGATCATCC 1462 Query 99064 ATGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTG 99123 | || ||||||||||||||||| ||||||||||| ||| |||||||| || || | Sbjct 1463 ACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGG 1522 Query 99124 TAACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGC 99183 | || |||||||| ||||| ||| | |||||||||||||| ||||| ||||| | || Sbjct 1523 TGCGGATCTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCGGTCTACGGCAGGC 1582 Query 99184 AGTGGCG 99190 ||||||| Sbjct 1583 AGTGGCG 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716528086197440