Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq10890 89.7 6e-12 seq8058 89.7 6e-12 >seq10890 Length=79204 Score = 89.7 bits (98), Expect = 6e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||| ||||||||||| || | | |||||| ||| ||||| |||| |||| ||| Sbjct 78868 ACGGCAGTCTGGATCTCCCGAGAGGTGATCGTTGAGCGTTTGTTGTAGTGAGCCAAACGC 78927 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 ||||||| | ||||||| |||| | ||||| || || ||||| | ||| Sbjct 78928 GACGCCTCGGCGGCGATGCGCTCGAAGACATCGTTCACGAAGCTATTCATAATGCTCATA 78987 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| ||||||| || ||| ||||| || ||||| | || ||||||||| Sbjct 78988 GCCTTGCTGGAGATACCGGTGTCCGGGTGAACTTGCTTCAATACTTTGTAGATG 79041 >seq8058 Length=40477 Score = 89.7 bits (98), Expect = 6e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||| ||||||||||| || | | |||||| ||| ||||| |||| |||| ||| Sbjct 109 ACGGCAGTCTGGATCTCCCGAGAGGTGATCGTTGAGCGTTTGTTGTAGTGAGCCAAACGC 168 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 ||||||| | ||||||| |||| | ||||| || || ||||| | ||| Sbjct 169 GACGCCTCGGCGGCGATGCGCTCGAAGACATCGTTCACGAAGCTATTCATAATGCTCATA 228 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||| ||||||| || ||| ||||| || ||||| | || ||||||||| Sbjct 229 GCCTTGCTGGAGATACCGGTGTCCGGGTGAACTTGCTTCAATACTTTGTAGATG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106143263007112