Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq10890 89.7 6e-12
seq8058 89.7 6e-12
>seq10890
Length=79204
Score = 89.7 bits (98), Expect = 6e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434
||||| ||||||||||| || | | |||||| ||| ||||| |||| |||| |||
Sbjct 78868 ACGGCAGTCTGGATCTCCCGAGAGGTGATCGTTGAGCGTTTGTTGTAGTGAGCCAAACGC 78927
Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494
||||||| | ||||||| |||| | ||||| || || ||||| | |||
Sbjct 78928 GACGCCTCGGCGGCGATGCGCTCGAAGACATCGTTCACGAAGCTATTCATAATGCTCATA 78987
Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||| ||||||| || ||| ||||| || ||||| | || |||||||||
Sbjct 78988 GCCTTGCTGGAGATACCGGTGTCCGGGTGAACTTGCTTCAATACTTTGTAGATG 79041
>seq8058
Length=40477
Score = 89.7 bits (98), Expect = 6e-12
Identities = 124/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434
||||| ||||||||||| || | | |||||| ||| ||||| |||| |||| |||
Sbjct 109 ACGGCAGTCTGGATCTCCCGAGAGGTGATCGTTGAGCGTTTGTTGTAGTGAGCCAAACGC 168
Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494
||||||| | ||||||| |||| | ||||| || || ||||| | |||
Sbjct 169 GACGCCTCGGCGGCGATGCGCTCGAAGACATCGTTCACGAAGCTATTCATAATGCTCATA 228
Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||| ||||||| || ||| ||||| || ||||| | || |||||||||
Sbjct 229 GCCTTGCTGGAGATACCGGTGTCCGGGTGAACTTGCTTCAATACTTTGTAGATG 282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106143263007112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |