Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 178 1e-39
seq7200 132 4e-26
seq10234 123 2e-23
seq9711 114 1e-20
seq9876 96.9 3e-15
seq10900 93.3 4e-14
>seq6771
Length=7421
Score = 178 bits (196), Expect = 1e-39
Identities = 179/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || |||||||||||||| || || ||||| ||||| |
Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| || |||| |||| ||| | ||| ||||| |||||||| ||||| || || |||||
Sbjct 383 GATACTATAGAGAACGTGAAAGCTAAA-ATCCAGGACAAAGAGGGAATTCCCCCGGATCA 441
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| ||| | || || || || |||||||| || ||| || | | |||||||| ||
Sbjct 442 ACAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAA 501
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932
||| ||||||||||| ||||| ||||| || |||||| | ||||||||||
Sbjct 502 CATCCAAAAGGAATCAACACTCCACTTAGTTTTGCGACTTCGCGGAGGCG 551
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || ||||||||||| || |||||||| ||||| |
Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| |||| | || ||| |||||||||||||||||||| || ||||| |||||
Sbjct 155 GACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 214
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || ||||| || ||||| || || ||| |||| | || || ||||||
Sbjct 215 CAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAAC 274
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || |||||||| || || || |||| |||| | |||||||||
Sbjct 275 ATCCAGAAGGAATCTACGCTTCATCTGGTTCTGCGTCTTCGCGGAGGC 322
>seq7200
Length=105881
Score = 132 bits (146), Expect = 4e-26
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || ||||| || || | ||||| || || |
Sbjct 105141 ATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTCG 105200
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| ||| || ||||| || |||||||| ||||| |||||
Sbjct 105201 GACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAG 105260
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881
||| | ||||||||||| || ||||| || ||||| ||| | || | || ||||| |
Sbjct 105261 CAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCG-CACAC-TTTCTGATTACA 105318
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||||| ||||| || | || || || | |||||||| || ||
Sbjct 105319 ACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||| || | || ||| | || || || || || || || || || || ||
Sbjct 104682 ACTATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCT 104741
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || ||| |||||| || ||||||||||| || || || ||
Sbjct 104742 TCTGACACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCTGAC 104801
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || |||||||||||||| || |||||||| || || | | | |||| || ||
Sbjct 104802 CAGCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTAC 104861
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || |||||||||||||| || |||||||| | ||||| || || ||
Sbjct 104862 AATATCCAAAAGGAATCGACTCTTCACTTGGTTCTTCGATTACGTGGCGG 104911
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| ||||||| || || || || || || || | || ||||| || |
Sbjct 104913 ATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTCT 104972
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || ||| || || ||||| |||||||| || || || |||||
Sbjct 104973 GATACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGATCAG 105032
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||||||| || || || || |||||| | | | |||||||||||
Sbjct 105033 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTATAAT 105092
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||||||||| || | || ||||| | || ||||| || ||
Sbjct 105093 ATTCAAAAGGAATCAACCTTGCATTTGGTTCTTCGTTTGCGTGGTGG 105139
Score = 111 bits (122), Expect = 1e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || ||||||| | || || || || ||||| | ||||| || || |
Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | |||| || ||| || || || || || |||||||| ||||| ||||||
Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881
|| | || ||||||||||| ||||||||||| ||| ||| | || | || || || |
Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCG-TACAC-TTTCTGACTACA 105774
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
| ||||| || ||||| || | || ||||| | || ||||| || ||
Sbjct 105775 ATATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 105823
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || ||| ||||||| | || || || || || || | || || ||||| |
Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||| || || || || |||||||| || || |||||
Sbjct 105429 GACACGATCGAGAACGTCAAAGCCAAA-ATTCAGGATAAGGAAGGAATCCCACCGGATCA 105487
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||| ||||| || ||||| ||||| | | | |||||||||||
Sbjct 105488 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAA 105547
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||| ||||| || | || || || | || ||||| || ||
Sbjct 105548 CATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGTTTGCGTGGTGG 105595
>seq10234
Length=192330
Score = 123 bits (136), Expect = 2e-23
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122
||||| |||||||| ||| || |||| |||||||| || ||||| | || |
Sbjct 2608 ACAAACATGTTGACAGCAATAGATGCTAAATTGCACACAGCAACTTCTCCAGGACCAGAA 2667
Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182
||||| |||||||| | ||||| ||| ||||| ||||| || |||| || || |||||
Sbjct 2668 TATTCAACAATTTCAGTACACAGATTGCTACATTTGATAGTGCCTATATGCTGGTGATTC 2727
Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238
|||||| ||||| |||||| ||||||||||| ||||| ||||| || |||||
Sbjct 2728 GATTTTCGATTACATTGATCTTTATAAAGCATATAAGGTGTTCCAGTCTCTACTTG 2783
>seq9711
Length=151070
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | || || |||| || |||||||| || || || || || || |
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || |||| || | ||| || ||||||||||| || || |||||||||||
Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAA-ATTCAAGACAAAGAGGGCATTCCTCCCGATCA 104366
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||| || || || ||||| || ||||| ||| |||| || || ||
Sbjct 104367 GCAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAA 104426
Query 24883 CATTCAAAAGGAATCGACACTACAC 24907
|||||||| ||||| ||||| |||
Sbjct 104427 TATTCAAAAAGAATCCACACTCCAC 104451
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | ||||| | || || || || || || | || || ||||| |
Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||| || || || || |||||||| || || |||||
Sbjct 104080 GACACGATCGAGAACGTCAAAGCCAAA-ATTCAGGATAAGGAAGGAATCCCACCGGATCA 104138
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||||||| ||||| || ||||| ||||| | | | |||||||||||
Sbjct 104139 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAA 104198
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||| || ||||| || || || || || ||| | | || |||||
Sbjct 104199 CATTCAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCTTCGTGGAGG 104246
Score = 89.7 bits (98), Expect = 5e-13
Identities = 95/122 (78%), Gaps = 4/122 (3%)
Strand=Plus/Plus
Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856
|| || |||||||| ||||| |||||||| | || ||||||||||| |||||||||||
Sbjct 103657 GATAAGGAAGGAATCCCTCCAGATCAACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAA 103716
Query 24857 GAT--TCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGT 24914
||| ||| | || | ||||| || |||||||| || || || || |||| ||||| |
Sbjct 103717 GATGGTCG-TACAC-TTTCAGACTACAACATTCAGAAAGAGTCTACGTTACATTTGGTCT 103774
Query 24915 TG 24916
||
Sbjct 103775 TG 103776
>seq9876
Length=23795
Score = 96.9 bits (106), Expect = 3e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864
|||||| || || ||||| ||| | ||||||||||| || || || |||| ||| ||
Sbjct 12830 AGGAATTCCGCCAGATCAGCAAAGATTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAG 12889
Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924
| |||| || || ||||||||||||||||| || |||| ||||||||||| |||||
Sbjct 12890 GACATTGTCGGACTACAACATTCAAAAGGAATCTACTTTACATTTGGTGTTGCGCTTGCG 12949
Query 24925 CGGAGG 24930
|| ||
Sbjct 12950 AGGCGG 12955
>seq10900
Length=227893
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || || ||||| || || || ||||| || || |||
Sbjct 197418 ACCATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGGCC 197359
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || | || | || || ||||| || || || |||||||| || || |||
Sbjct 197358 TCTGATACCATCGAGAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCACCGGAT 197299
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | | ||||| || || ||||| || |||||| | | | | ||||||||
Sbjct 197298 CAGCAGAGACTCATCTTCGCTGGCAAACAACTAGAGGATGGACGCACCCTTTCAGATTAC 197239
Query 24881 AACATTCAAAA 24891
|||||||||||
Sbjct 197238 AACATTCAAAA 197228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449829350534080
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