Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq10678 215 4e-51
seq7200 102 7e-17
seq9711 100 2e-16
seq6771 89.7 4e-13
seq9876 87.8 1e-12
>seq10678
Length=68604
Score = 215 bits (238), Expect = 4e-51
Identities = 292/405 (72%), Gaps = 4/405 (1%)
Strand=Plus/Minus
Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACG 34311
||| |||| || || |||||||| || || |||| || || || || || ||
Sbjct 39761 GCCATGATGTCCACACGCTTTGCAACCTTGCGAGATCGTGCCTTTCTT--CGAACTAACC 39704
Query 34312 ATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCA 34371
|| || || || ||||| ||||| || ||||||| | ||| |||| || ||||||||
Sbjct 39703 ATCAGTTCGGTTTCCGGATTGTCGCAGGCCGGACAAAGGACATACTTTCGAATGAAACCG 39644
Query 34372 TCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431
|| | || || || | ||| | ||| || || ||||||||||| || || || |||
Sbjct 39643 TCCAATAGATCTTGCAGCTTTGTTGCGTCATGCGAACCGTTGACGATAAAACGCTCATTT 39584
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
||| |||| | |||||| || ||||||| |||||| || || || || ||||| || |
Sbjct 39583 TTGAAATCAAACTGCGTCTGGGCGCCCAACTCGCATCCAAAATATTTGGTCGGATACGTA 39524
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|||||||| |||| |||||| || | || |||||||||||| || ||||| |||||
Sbjct 39523 GCCGGACGACCAATCGCCTTCGCCACATCCACCATGTTGACGATCACTGTCTTAATGCCA 39464
Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611
|| || || ||||| || || || ||| |||||||| ||||| || || || || ||
Sbjct 39463 TTTCCTTTGCCTTCCACTTTTGCCTGGATCCGCGGCATCTTGTAACGATAAAAGGCATCG 39404
Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656
|||||||| || ||||| ||| || |||| || | | ||||
Sbjct 39403 CTGACATTGCGATTGACGTTTACACTCGCCATGATGACCGATGTT 39359
>seq7200
Length=105881
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || |||||||||||| | || || |||||||| || | ||| ||| ||
Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|| || ||| | || ||| || ||| || || ||||| | || ||||||
Sbjct 105200 GGACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 105259
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|||||| | || | ||| || ||||| || ||||| | | ||| | | ||||||||
Sbjct 105260 GCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAA 105319
Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475
||||||||||||||| ||||||||
Sbjct 105320 CATTCAAAAAGAATCAACGTTGCA 105343
>seq9711
Length=151070
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| ||||||||||| |||||||| |||||||| || || | || ||| ||
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || ||| ||| |||||||| ||| | || |||||
Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|||||||| |||| || || ||||| || ||||| | |||| || | || |||||
Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500
|||||||||||||| || | ||| | || | |||| |||| |||
Sbjct 104428 ATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGGA 104475
>seq6771
Length=7421
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || |||||| | ||||| ||||| || ||| | ||| || ||
Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| | | | || ||| || || |||||||| || | ||| |||||||
Sbjct 383 GATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAA 442
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || |||| || || |||||||| || |||| ||| || | | |||||||||
Sbjct 443 CAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAAC 502
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| ||||| ||||| || | ||| | || || |||| || || ||
Sbjct 503 ATCCAAAAGGAATCAACACTCCACTTAGTTTTGCGACTTCGCGGAGG 549
>seq9876
Length=23795
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
||||| |||||| | || | ||| || || || |||| |||| ||| ||| || ||||
Sbjct 12843 GATCAGCAAAGATTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGGACATTGTCGGAC 12902
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|||||||||||||| |||||||| || || ||||||| | ||||||| ||
Sbjct 12903 TACAACATTCAAAAGGAATCTACTTTACATTTGGTGTTGCGCTTGCGAGGCGG 12955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412780537631048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |