Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10678 215 4e-51 seq7200 102 7e-17 seq9711 100 2e-16 seq6771 89.7 4e-13 seq9876 87.8 1e-12 >seq10678 Length=68604 Score = 215 bits (238), Expect = 4e-51 Identities = 292/405 (72%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACG 34311 ||| |||| || || |||||||| || || |||| || || || || || || Sbjct 39761 GCCATGATGTCCACACGCTTTGCAACCTTGCGAGATCGTGCCTTTCTT--CGAACTAACC 39704 Query 34312 ATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCA 34371 || || || || ||||| ||||| || ||||||| | ||| |||| || |||||||| Sbjct 39703 ATCAGTTCGGTTTCCGGATTGTCGCAGGCCGGACAAAGGACATACTTTCGAATGAAACCG 39644 Query 34372 TCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 || | || || || | ||| | ||| || || ||||||||||| || || || ||| Sbjct 39643 TCCAATAGATCTTGCAGCTTTGTTGCGTCATGCGAACCGTTGACGATAAAACGCTCATTT 39584 Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||| |||| | |||||| || ||||||| |||||| || || || || ||||| || | Sbjct 39583 TTGAAATCAAACTGCGTCTGGGCGCCCAACTCGCATCCAAAATATTTGGTCGGATACGTA 39524 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 |||||||| |||| |||||| || | || |||||||||||| || ||||| ||||| Sbjct 39523 GCCGGACGACCAATCGCCTTCGCCACATCCACCATGTTGACGATCACTGTCTTAATGCCA 39464 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || || || ||||| || || || ||| |||||||| ||||| || || || || || Sbjct 39463 TTTCCTTTGCCTTCCACTTTTGCCTGGATCCGCGGCATCTTGTAACGATAAAAGGCATCG 39404 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 |||||||| || ||||| ||| || |||| || | | |||| Sbjct 39403 CTGACATTGCGATTGACGTTTACACTCGCCATGATGACCGATGTT 39359 >seq7200 Length=105881 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||||||| | || || |||||||| || | ||| ||| || Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| || ||| || || ||||| | || |||||| Sbjct 105200 GGACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 105259 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | ||| || ||||| || ||||| | | ||| | | |||||||| Sbjct 105260 GCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAA 105319 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 ||||||||||||||| |||||||| Sbjct 105320 CATTCAAAAAGAATCAACGTTGCA 105343 >seq9711 Length=151070 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| |||||||| |||||||| || || | || ||| || Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||| ||| |||||||| ||| | || ||||| Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| || || ||||| || ||||| | |||| || | || ||||| Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||||||||||||| || | ||| | || | |||| |||| ||| Sbjct 104428 ATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGGA 104475 >seq6771 Length=7421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||| | ||||| ||||| || ||| | ||| || || Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || || |||||||| || | ||| ||||||| Sbjct 383 GATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAA 442 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| || || |||||||| || |||| ||| || | | ||||||||| Sbjct 443 CAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAAC 502 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| ||||| || | ||| | || || |||| || || || Sbjct 503 ATCCAAAAGGAATCAACACTCCACTTAGTTTTGCGACTTCGCGGAGG 549 >seq9876 Length=23795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| |||||| | || | ||| || || || |||| |||| ||| ||| || |||| Sbjct 12843 GATCAGCAAAGATTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGGACATTGTCGGAC 12902 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||||||||| |||||||| || || ||||||| | ||||||| || Sbjct 12903 TACAACATTCAAAAGGAATCTACTTTACATTTGGTGTTGCGCTTGCGAGGCGG 12955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412780537631048