Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10890 104 4e-16 seq8058 104 4e-16 >seq10890 Length=79204 Score = 104 bits (114), Expect = 4e-16 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || ||||||||| | || ||||| || | | Sbjct 78797 TGTACTTGGTGACAGCCTTGGTGCCTTCACTCACGGCGTGCTTCGCAAGTTCTCCAGGTA 78856 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||| ||||||||||| || | | |||||| ||| |||| |||| Sbjct 78857 GCAAAAGCCTGACGGCAGTCTGGATCTCCCGAGAGGTGATCGTTGAGCGTTTGTTGTAGT 78916 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || | ||| | ||||||| | ||||||| |||| | ||||| || || || Sbjct 78917 GAGCCAAACGCGAC--GCCTCGGCGGCGATGCGCTCGAAGACATCGTTCACGAAGCTATT 78974 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | ||| ||||||| || ||| ||||| || ||||| | || || Sbjct 78975 CATAATGCTCATAGCCTTGCTGGAGATACCGGTGTCCGGGTGAACTTGCTTCAATACTTT 79034 Query 1485708 GTA 1485710 ||| Sbjct 79035 GTA 79037 >seq8058 Length=40477 Score = 104 bits (114), Expect = 4e-16 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| || || ||||||||| | || ||||| || | | Sbjct 38 TGTACTTGGTGACAGCCTTGGTGCCTTCACTCACGGCGTGCTTCGCAAGTTCTCCAGGTA 97 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||||| ||||||||||| || | | |||||| ||| |||| |||| Sbjct 98 GCAAAAGTCTGACGGCAGTCTGGATCTCCCGAGAGGTGATCGTTGAGCGTTTGTTGTAGT 157 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || | ||| | ||||||| | ||||||| |||| | ||||| || || || Sbjct 158 GAGCCAAACGCGAC--GCCTCGGCGGCGATGCGCTCGAAGACATCGTTCACGAAGCTATT 215 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | ||| ||||||| || ||| ||||| || ||||| | || || Sbjct 216 CATAATGCTCATAGCCTTGCTGGAGATACCGGTGTCCGGGTGAACTTGCTTCAATACTTT 275 Query 1485708 GTA 1485710 ||| Sbjct 276 GTA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914955438327704