Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq8165 291 2e-74 >seq8165 Length=1351 Score = 291 bits (322), Expect = 2e-74 Identities = 617/908 (68%), Gaps = 27/908 (3%) Strand=Plus/Plus Query 15143 ATCGACTTCACGCTGGGCGATTCCAGCTCGCGCGCCAACCTGCTGAACGAAGCAAAGGTG 15202 ||||||||| || |||| | ||| |||||||||||||||||| || | || ||| Sbjct 46 ATCGACTTCGGTCTCTCCGATGCGAGCAGCCGCGCCAACCTGCTGAACCAATCGAACGTG 105 Query 15203 GCGACCATCATTCGCGAGGACGGTTTCCGCCTGTGGGGCAACCGCACCCTGTCGAGCGAT 15262 ||||||||||| ||||| | || |||||||||||||||||||| ||| ||||| Sbjct 106 GCGACCATCATCCGCGAAGGTGGCTTCCGCCTGTGGGGCAACCGTACCGCCAGCAGCGAC 165 Query 15263 CAAAAGTGGGCGTTCCTGTGCGTGCGCCGCACCGCCGACATCATCAACGACAGCATCCTG 15322 || |||||| ||||||||| ||| ||||| ||||||||||| ||||||| || | Sbjct 166 CAGAAGTGGCAGTTCCTGTGTGTGGTGCGCACTGCCGACATCATTGCCGACAGCCTCGAG 225 Query 15323 GTGAACCACCTGTGGGCCGTGGATCGCGGCATCACCAAGCAGTACATCGAAGACGTGGTG 15382 | ||| ||||||||||| || |||||||||| |||| ||| |||| |||||| Sbjct 226 GCCGCCCATCTGTGGGCCGTCGACCGCGGCATCAGCAAGACCTACGTCGACGACGTGCGT 285 Query 15383 GAAGGCGTGAACGCCTACCTGCGCCACCTGGTCAGCATCGGCGCCATCCTGGGCGGCACC 15442 || || || || |||| ||||||| |||| | | || || ||||| ||||||| | Sbjct 286 GAGGGTGTCAATGCCTTCCTGCGCGGCCTGAAGACCCAGGGTGCGATCCTCGGCGGCAAC 345 Query 15443 TGCTGGGCCGACCCTGACGTGAACACGCCCGACCAGATCGCGCAGGGTAAGGTATACTTC 15502 ||||||| |||||| ||| ||||| | | ||| | || ||||| | |||| Sbjct 346 TGCTGGGTCGACCCCGACCTGAACGCAGCGGACAGCGTGGCCCAGGGCCGCTTCTACTGG 405 Query 15503 GATTTCGATTTTACCGCTGTCTATCCGGCTGAGCACATCATCATGCGCAGCCAACTGGTT 15562 || ||||| || ||| | ||| |||| |||||| | | | | |||| || || Sbjct 406 GACTTCGACTTCACCCCGACCTACCCGGGTGAGCAGCTGACCTTCCGCATGCACATGAAC 465 Query 15563 AACGATTACATCGTGGAGATTTTCGAATAATGGCCGCTCGCGACGTTCGGAAGAACTTTA 15622 ||| | ||| || |||||| ||| || ||| || ||| | | || || ||||| | Sbjct 466 AACAACTACGTCTCGGAGATCTTCTAAGCATG---GCGCGCAAGATCCGCAAAAACTTCA 522 Query 15623 ACCTGTTCGTGGATGGCCGGGGCTATGCCGGCCAGGCCGACGA-ATTCAACGCGCCCAAG 15681 | | | ||| || ||| ||| |||||||| ||| || || |||| ||| |||||| Sbjct 523 ATTTCTACGTCGACGGCAAGGGTTATGCCGG-CAGCGTGATGACCTTCACCGCTCCCAAG 581 Query 15682 CTGGCAACCGTGGA-AGAGGAATTCCGGGCTGGCGGCATGGACGCGCCAATTGACGT-GA 15739 ||| | | | || ||||| |||| ||| ||||||||| ||| || | || | | Sbjct 582 CTGAC-GCTGAAGACCGAGGACTTCCAGGCCGGCGGCATGCTCGCACCGACCGAAATCGT 640 Query 15740 CCATGGGCATGCAGAAGCTGAC-----GTGTGACTTCAGCCTGTTTGCCTATGACCGCAA 15794 || || || | | |||||||| ||||||| |||| || ||||| | Sbjct 641 CCTCGGCCACG-AAAAGCTGACTGCCGAAGTGACTTTCGCCT-----CCGATGACGCGGA 694 Query 15795 CGTGCTGGCGCTGTTCGGCGTCGTCAATGGCAATGCCGTTCCGC-TGACTGTGCGCGAGG 15853 | || | |||| |||| || | |||| | || | || | || | ||||||| Sbjct 695 GATCATGTCCAAGTTCCACGTCATCGAAAGCAA-GGAGTACGGCTTCACCGCCCGCGAGG 753 Query 15854 GCCTGGAGTCGTTCGACGGCAC---CGCCAAGGCTGTGGTTCACACCATGCGCGGCAAAA 15910 ||||| | |||||| || | || || || || |||| |||||||||||| Sbjct 754 CGCTGGAAGCCGACGACGGTACGGTCTCCCAG---GTCGTGCACAACATGCGCGGCAAGG 810 Query 15911 TCACCGAGCTGGACCCAGGCACCAGCAAGCCTGGCGAGCTTCCACCGCTGAAGGCCACCA 15970 | | |||||| | ||| | |||| |||||| || | |||| | | Sbjct 811 TGAAGTCGCTGGATCGCGGCGAGACCAAGGTCGGCGAGAAGGGCACGGTCAAGGTCGGCC 870 Query 15971 TGTCGCTGACGTATTACAAGCTGACCCACGACGGCCAGGTGATCCACGAAATCGACGTGG 16030 || |||||| || |||||||||||||| | || |||||| | || || ||||||||| Sbjct 871 TGGCGCTGAGCTACTACAAGCTGACCCATGGCGCGCAGGTGGTGCAGGAGATCGACGTGA 930 Query 16031 AAAACATG 16038 |||||| Sbjct 931 CCAACATG 938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139263127201632