Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7200 176 3e-39 seq9711 158 9e-34 seq6771 158 9e-34 seq10900 104 2e-17 seq9876 98.7 8e-16 >seq7200 Length=105881 Score = 176 bits (194), Expect = 3e-39 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || || || ||||| | ||| ||||||||||||||||| ||||| | | Sbjct 105367 CCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAA 105308 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||||||||||||| | |||||||||||||||||||| ||| Sbjct 105307 AGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 105248 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||||| |||||| |||| | ||||| ||| || || Sbjct 105247 ATTCCTTCCTTATCTTG-AATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGAC 105189 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || || ||||| || || | ||||| ||||| ||||||||| Sbjct 105188 TTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140 Score = 165 bits (182), Expect = 6e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | |||||| || |||||||| | || ||||| |||||||| |||||||| | Sbjct 105140 TCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGA 105081 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| ||| || ||||| || |||||| | |||||||| |||||||| || || Sbjct 105080 GAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGG 105021 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || ||||| ||||| |||||| | ||||||| | || | || |||||| |||| Sbjct 105020 GATGCCTTCTTTATCTTG-AATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTA 104962 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || | ||| || || || ||||| | |||||||||||| ||||||||| Sbjct 104961 CCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || || ||||| | ||| ||||||||||||||||||||||| | | Sbjct 105595 CCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAA 105536 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || || || | ||||| || ||||||||||| || Sbjct 105535 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 105476 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || |||||| | |||||| | || | ||||| || ||| || Sbjct 105475 ATTCCTTCCTTATCCTG-AATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAAC 105417 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || || || ||||||||||| || ||||| Sbjct 105416 CTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 122 bits (134), Expect = 7e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || || ||||| ||||| || ||||| ||||| || || || || | | ||| || Sbjct 104902 AATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGT 104843 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || || || ||||| |||||| | ||||| | ||||| || || || || || ||| Sbjct 104842 CCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCT 104783 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 ||||| || ||| |||| ||| || | || | |||||||||| || || |||||||| Sbjct 104782 TTGTCCTG-AATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGT 104724 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || ||||| || || || || || |||||||| Sbjct 104723 TATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 >seq9711 Length=151070 Score = 158 bits (174), Expect = 9e-34 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||||||||||||||| || || || | | || || || ||||||||| Sbjct 104450 TGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGT 104391 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 |||||||| | |||| |||||||||||| || ||||| |||||||||||||| |||||| Sbjct 104390 TTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTG-AATTTT 104332 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || || | || | ||||| ||| || || || || ||||||||||||||||| Sbjct 104331 CGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGT 104272 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||||||||| Sbjct 104271 TAAAGTCTTGACAAATATCTGCAT 104248 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || |||||||| | || |||||||| |||||||| || || | | Sbjct 104018 CCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAA 103959 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || |||||||| ||||| | || ||||| ||||||||||| || Sbjct 103958 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGG 103899 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | ||||||| |||| | ||||| ||| ||| || Sbjct 103898 ATTCCTTCCTTATCTTG-AATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAAC 103840 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||||||||| | ||||||||||| |||||||| Sbjct 103839 CTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| || ||||||||||| |||||||||||||| | || ||||| || || Sbjct 104228 ACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCT 104169 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || || || || | ||||| || ||||||||||| || || || || || || || Sbjct 104168 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTG- 104110 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | |||||| | || | ||||| || ||| || || | || || || || Sbjct 104109 AATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTT 104050 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || || ||||| Sbjct 104049 TCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 >seq6771 Length=7421 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | |||||| |||| ||||||||| ||||| || || |||||||| || | | Sbjct 321 CCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAA 262 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || ||||||||||||||| | || | | |||||||| || ||| Sbjct 261 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGA 202 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || ||||||| | |||| |||||| ||| ||| ||| Sbjct 201 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACT 142 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||||||| ||||| | ||||| || || |||||||| Sbjct 141 TCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || || || || || ||||| ||||| ||||| ||||| | || || | | Sbjct 537 CGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCA 478 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||||||||| | || | | || |||||||| ||||| ||||||||| Sbjct 477 TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTG 418 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| ||| || | |||| ||| || ||| ||| |||||||| || ||| Sbjct 417 TCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATA 358 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | ||||| || || |||||||| Sbjct 357 GTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 >seq10900 Length=227893 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||||||||| ||||| | || |||||| ||| || |||||||||||||| | | Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 | | ||| ||||||||||| ||||| || || || || || ||| || | ||||| | Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTG-AATCTTAGCCTTGACGTTC 197344 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || ||||| || || || || || || || || || || | ||| || || Sbjct 197345 TCGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACG 197404 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 197405 AAGATCTGCAT 197415 >seq9876 Length=23795 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | ||| |||| ||||||||| | || ||||| ||||||||||| || |||| | Sbjct 12955 CCGCCTCGCAAGCGCAACACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 12896 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | ||| || | ||| ||||||||| | ||||||||||||||||| ||||| Sbjct 12895 AATG-TCCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGG 12837 Query 29679 AATACC 29684 ||| || Sbjct 12836 AATTCC 12831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385162223191176