Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq7345 86.0 2e-12 >seq7345 Length=15758 Score = 86.0 bits (94), Expect = 2e-12 Identities = 241/361 (67%), Gaps = 8/361 (2%) Strand=Plus/Plus Query 6038 CACGGAGGTTATCGACGCACGTTTTCGATACCCGCATACCGCCTTGTTGTTTATCGAGTT 6097 ||| ||||| |||||||| | || |||||| | || ||| || ||| ||||||| Sbjct 7886 CACCGAGGTGATCGACGCGAAGCTGCGCTACCCGAACACGGCCCTGCTGTACGTCGAGTT 7945 Query 6098 CAACGCAAAATCATTCCAG-AATATCCCGAAAATATC-GT-GCCTGGCCAAAGGGCGTAT 6154 || |||| | || | ||| || || ||| | | || | ||| | ||||| | Sbjct 7946 CAGCGCAGAG-CAGTTCAGCAACATTCCGGCTGTCACAGTCGACTGCCGC--GGGCGGAA 8002 Query 6155 TATCCGAGTACCAAGTAACTATGACCCAGACACCCGCACCTATTCCGGCAATTGGGATGG 6214 ||| ||| || || || || || || || ||||| |||| ||||| ||||| || Sbjct 8003 GGTCCAAGTGCCGAGCAATTACGATCCGGAGACCCGGGCCTACCTCGGCATCTGGGACGG 8062 Query 6215 GTCGTTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTACGACGTATTGACTCA 6274 || | ||| ||||| ||| |||| |||| ||| |||||| | |||| || Sbjct 8063 CACGATGAAACAGGCCTGGACCGACAACCCGGTCTGGCACACCTACGACATCGTGAC-CA 8121 Query 6275 ACCG-CGGTTCGGGCTTGGTAAGCGCGTTACGGCGGCCATGCTAGATAAATGGGAGTTGT 6333 || || ||||| | ||||| ||| | | ||| ||| |||| |||||| ||| Sbjct 8122 ACGATCGCTTCGGTGTGGGTAAACGCATCAAGGCCTGGATGGTAGACCGTTGGGAGATGT 8181 Query 6334 ACCGCATCGCACAGCGCTGCGATCAGATGGTGCCGGATGGTGCCGGTGGTGTTGAGCCGC 6393 |||| || | ||| |||||| ||| ||||||||||||| ||||| ||||||| Sbjct 8182 ACCGGATTTCCCAGTACTGCGACCAGTTGGTGCCGGATGGGAAGGGTGGCCAGGAGCCGC 8241 Query 6394 G 6394 | Sbjct 8242 G 8242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137512979460528