Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11428 205 7e-47 seq10579 118 8e-21 >seq11428 Length=72031 Score = 205 bits (226), Expect = 7e-47 Identities = 677/1043 (65%), Gaps = 10/1043 (1%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 |||| |||||||| | ||| || |||||||||||||| || |||||||| | || || | Sbjct 19448 TACCGTTGGCATCGATATCGAAGGTGACTTCAATTTGCGGTACCCCTCTAGGCGCCGGAG 19507 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || ||| | ||| | || ||| |||| ||||| || || | || || | Sbjct 19508 GTATACCAGTCAACTCGAATTTGCCGAGAATATTGTTATCCTTCGTCATCGCTCTCTCTC 19567 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 ||||| | | ||| ||| ||| | | |||||| || ||||| |||||||| ||||| Sbjct 19568 CCTCGTAGACTTGAATAAGTACTCCCGGTTGATTGTCGGAATACGTTGTAAA-CGTCTGG 19626 Query 281622 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | ||| || || || || || || | || | ||||||| | |||||||| Sbjct 19627 GTCTGTTTCGTTGGTATCGTCGTATTCCTCTTGATCAAGGTGGTCATGACGCCACCAGCG 19686 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| | || | || || || || | || | | || ||| | ||| Sbjct 19687 GTCTCAATACCCAATGACAACGGTGTCACGTCCAGCAGAAGTAAATCTTGGACCGCTTCG 19746 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | |||| | ||| || || |||| || || || || |||||||| ||||| Sbjct 19747 GATTTGTCACCATGTAAAATCGCCGCCTGAACTGCCGCGCCGTAGGCAACAGCCTCATCC 19806 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 281860 ||||||| || || |||| || || |||||||| |||| | ||| || | | | | Sbjct 19807 GGATTAATAGATTTGTTTAATTCCTTGCCATTGAAGAAATCTTGAAGTAGCTTTTGAATC 19866 Query 281861 TTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGT 281920 || || || | | || || || |||| || || || ||||||| || |||| Sbjct 19867 TTTGGTATCCTGGTCGAGCCACCGACTAGAACGATACTGTGAACCTGTGCCTTGTCCATC 19926 Query 281921 TTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAA 281980 || | || | | || || ||||||||||| |||||||| || | |||| Sbjct 19927 TTCGCGTCTCTAAGCGCCTTCTCCACGGGTTCAAGGGTGCTTCTAAACAGATCCGCACAA 19986 Query 281981 AGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTTCGAACAAAG 282038 || || ||||| | || || ||| | |||| | || |||| || || |||||||| | Sbjct 19987 AGCTCCTCGAACCTGGCCCTGGTA--ATTGACGTGTAGAAATCTATACCCTCGAACAACG 20044 Query 282039 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 282098 |||| | || || | | || ||||| || || | | || || | ||||| | Sbjct 20045 AATCGATCTCGATGCTCGCCTGCGTCGACGAGCTCAGCGTTCTCTTCGCTCTCTCACAGG 20104 Query 282099 CTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCT 282156 | ||||| | | || || || || ||| || | ||||| || |||| || || || Sbjct 20105 CGGTCCTCAAGCGTCTTAGAGCTCTCTTGTTGGT--ATTCAGTTCCTTTTTGTACTTCCT 20162 Query 282157 CTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 282216 |||||| || | || | | || | ||||| ||||| || ||||| || | | Sbjct 20163 CTTGAACTCCTGCACGAAGTGGTTCACCATTCGATTGTCAAAGTCCTCACCGCCGAGATG 20222 Query 282217 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAAC 282276 || | || | ||||| | | || | || | || || || | | || | | || Sbjct 20223 CGTGTCGCCGGCCGTAGATTTCACCTCAAAGATGCCGTCCTCGATCGTCAGGATCGACAC 20282 Query 282277 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTT 282336 || ||| ||||| || | || || || || |||||| | || | || || Sbjct 20283 GTCGAAGGTACCACCGCCTAAGTCGAAGATCAGAACATTCTTCTCACCCGCAGCTTTCTT 20342 Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 |||||||||||||| | || || || || || || || || || || | ||||| || Sbjct 20343 GTCAAGACCATACGCTATCGCGGCGGCCGTGGGCTCGTTTATTATCCTGAGGACATTCAG 20402 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 ||||||||| || ||||||||||| || || || || || || || || || || || Sbjct 20403 ACCAGCAATAGCGCCGGCATCTTTAGTTGCCTGCCTCTGAGAGTCATTGAAGTAAGCCGG 20462 Query 282457 AACAGTAATAACGGCATCTGTTA 282479 || || || || || | |||| Sbjct 20463 TACTGTGATGACTGCGTTCGTTA 20485 >seq10579 Length=342791 Score = 118 bits (130), Expect = 8e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | ||||| | || || |||| ||||| || |||||||| ||||| | Sbjct 109949 TTTATCTTCCTGCTTATCCATGCCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTAC 110008 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||||| | ||||||||| || |||||||| || ||||||| ||||||||| Sbjct 110009 ACGAAGCACATTTAATCCAGCAATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATC 110068 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 ||||||||||| || ||||||||||| |||| | ||||| Sbjct 110069 ATTAAAATATGCTGGCACAGTAATAACAGCATTTTTTACT 110108 Score = 111 bits (122), Expect = 1e-18 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 ||||| ||||| || ||||| |||||||| ||||||| ||| |||| ||| || ||| Sbjct 109971 CCGTAAGCAAGTGCAGCTGCGGTTGGTTCGTTAATTACACGAAGCACATTTAATCCAGCA 110030 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 |||| | ||| ||| || ||||||| |||| ||||||||||||||||| |||||| Sbjct 110031 ATTTGACCAGCATCTTTTGTCGCTTGTCGTTGTGAATCATTAAAATATGCTGGCACAGTA 110090 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 110091 ATAACAGCATTTTT 110104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740034573686736