Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq8239 98.7 4e-16 seq3805 82.4 3e-11 >seq8239 Length=1603 Score = 98.7 bits (108), Expect = 4e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 52002 CCGTTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGTCT 52061 |||||||| ||| || ||| | ||||| |||| |||| | ||||| || || | Sbjct 1465 CCGTTCGTCGGGCCGTGGGTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACC 1524 Query 52062 GTTGGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACATC 52121 || || | || ||||| |||||||| || ||||||| || |||||||| ||||||||| Sbjct 1525 GTGGGCTCGGTGATCCCGACCCGCGGTGCGATCATCCCGGCGGCGGTCGGCGTCGACATC 1584 Query 52122 GGCTGCGGCATG 52133 |||||||||||| Sbjct 1585 GGCTGCGGCATG 1596 >seq3805 Length=3888 Score = 82.4 bits (90), Expect = 3e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 595 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCC 649 |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 2184 TAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCC 2238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201416604566592