Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq8096 105 5e-18 >seq8096 Length=1015 Score = 105 bits (116), Expect = 5e-18 Identities = 134/182 (74%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 94593 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 94652 |||| |||||| ||||| || | || || ||| ||| |||||||||||||||| || Sbjct 118 GTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAGGATCAG 177 Query 94653 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTT 94712 || ||||||||||| |||||||||||||| | |||| | ||| | || | | || Sbjct 178 GTGGATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATGAGTTCTTCGATC---TT 234 Query 94713 CTTGTAGCCAC--CCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770 |||| |||| ||||||| ||||| || || || || | || ||||||||| ||| Sbjct 235 CTTG--CCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATGGTGGGT 292 Query 94771 AG 94772 || Sbjct 293 AG 294 Score = 89.7 bits (98), Expect = 3e-13 Identities = 115/156 (74%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 94968 AGGGGTCGCCCG-GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCG 95026 ||| |||| || ||| |||||||| | | ||| | |||||| | |||||||||| Sbjct 576 AGGCGTCGGCCTTGTACAGCAGCGACAGGATCATGGCGTTGATCCCGACCGACTTGCCCG 635 Query 95027 ATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGAGACGTCC- 95085 | ||||| | ||| ||||||| ||| ||||||||||||||||||| || || || Sbjct 636 ACCCGGTGGTGCCCGCCACCAACAGGTGCGGCATCTTGGCCAGGT---CGGCCACCACCG 692 Query 95086 --TTACCCTCGACGTCCTTGCCCACTGCCACGGTCA 95119 || || ||| ||||||||||| |||| ||||| Sbjct 693 GATTGCCGGCGATGTCCTTGCCCAGCGCCATGGTCA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340071293464448