Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq7345 105 2e-18 seq6732 86.0 2e-12 >seq7345 Length=15758 Score = 105 bits (116), Expect = 2e-18 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 12922 GAGCGGGTAtttttttGCCTGGAGAAACATC-GATGCCGATCACCGCGCAGCAACTACTG 12980 ||||| | ||||| | ||||||||||| | |||||| ||||| | ||||||||| ||| Sbjct 15501 GAGCGTGCCTTTTTGTTCCTGGAGAAACCACAGATGCCCATCACTGAGCAGCAACTGCTG 15560 Query 12981 CAGATCCTCCCGAACGCCGGCCAGAGAGCCGGCGTTTTTG 13020 || ||||||||||||||||||| ||||||||||||||| Sbjct 15561 CATATCCTCCCGAACGCCGGCCCTCGAGCCGGCGTTTTTG 15600 >seq6732 Length=16230 Score = 86.0 bits (94), Expect = 2e-12 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 15655 CTTGCATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCA 15704 |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 14549 CTTGCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCA 14500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163342856451264