Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 199 8e-46
seq9711 188 1e-42
seq6771 161 2e-34
seq10900 122 2e-22
seq9876 86.0 1e-11
>seq7200
Length=105881
Score = 199 bits (220), Expect = 8e-46
Identities = 181/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | |||||| ||||| || |||| || ||||| || || ||||||||||| ||
Sbjct 105139 CCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAG 105080
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | ||| || || ||||| |||||||||||||| | ||| || |||||||| ||
Sbjct 105079 AGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGG 105020
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| ||||||||||| || ||||| ||||| |||||||||||| || |||||
Sbjct 105019 ATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACC 104960
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||||||| || ||||| || |||| || || ||||| |||||||||
Sbjct 104959 TCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
Score = 199 bits (220), Expect = 8e-46
Identities = 182/230 (79%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | ||| || |||||||| |||| || |||||||| || || || |||||||
Sbjct 105369 TACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAG 105310
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | |||||| || |||||||| ||||||||||| | |||||| ||||| ||||
Sbjct 105309 AAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 105250
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||||||||| |||||||| || ||||| ||||| || || || |
Sbjct 105249 GAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGA 105190
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||||| || || || || ||||| | || || ||||| |||||||||
Sbjct 105189 CTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140
Score = 192 bits (212), Expect = 1e-43
Identities = 180/229 (79%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | |||||| ||||| || |||| || ||||||||||| ||||| || ||||
Sbjct 105825 TACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAG 105766
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||| ||||| || |||||||| |||||||||| || |||||||||||||
Sbjct 105765 AAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAG 105706
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||| ||||| || ||||| |||||||| ||||| || | || |
Sbjct 105705 GGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAA 105646
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||| || || ||||| || ||||| || || || || || |||||
Sbjct 105645 CTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
Score = 161 bits (178), Expect = 2e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | |||||| |||||||| |||| || |||||||| || || |||||||| |
Sbjct 105597 TACCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTG 105538
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| ||||| || ||||| || ||||| | || || ||||| || |
Sbjct 105537 AAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTG 105478
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||| ||||| || ||||| || || || ||||| || | ||| |
Sbjct 105477 GGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAA 105418
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||| || ||||| || || ||||| || |||||
Sbjct 105417 CCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652
|| || ||||| ||||| ||||| ||||| || || ||||| || ||||| | | |
Sbjct 104902 AATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGT 104843
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|||||||| || ||||||||||||||||| | | || || || || || || |||||
Sbjct 104842 CCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCT 104783
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|| || |||||||||||||| || || || || || ||| || || || || | ||||
Sbjct 104782 TTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTT 104723
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| || ||||||||||| || || ||||||||
Sbjct 104722 ATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685
>seq9711
Length=151070
Score = 188 bits (208), Expect = 1e-42
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | |||||| ||||| || |||| || ||||||||||| || || || || |
Sbjct 104020 TACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGG 103961
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| |||||||||||||| ||||||| ||| || ||||| ||||
Sbjct 103960 AAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAG 103901
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||||||||| || ||||| ||||||||||| || || || ||| |
Sbjct 103900 GGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAA 103841
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || || ||||| || | || || ||||| ||||||||
Sbjct 103840 CCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 156 bits (172), Expect = 8e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| | | | || |||||| |||||||| ||||||||||| || |||||||| |
Sbjct 104248 TACCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTG 104189
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | ||||| ||||| || ||||| || ||||| | || || ||||| || |
Sbjct 104188 AAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTG 104129
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| |||||||||||||| ||||| || ||||| || || || ||||| || | ||| |
Sbjct 104128 GGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAA 104069
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || ||||| || ||||| || || || || || |||||
Sbjct 104068 CCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||| | || || || | ||| || || |||||||| || ||||| || || ||
Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | ||| ||||| || |||||||| ||||| || || |||||||| ||||| |||||
Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || || || |||||||| || || || || || || || || || || || ||
Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||||| || ||||| || || ||||| ||||||||||||||
Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 102 bits (112), Expect = 2e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673
||||| |||||||| || || || || || || | | ||| ||||| || ||||||||
Sbjct 103760 GTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGACCATCTTCCAGCTGTTTTCCG 103701
Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717
|||||||||| || |||||||||||||| ||||||||||||||
Sbjct 103700 GCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATC 103657
>seq6771
Length=7421
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||||||||| | || || |||||||| ||||| || ||||| || ||
Sbjct 321 CCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAA 262
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| |||| || ||||| |||||||| |||||||| ||||| | || |||||||||||
Sbjct 261 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGA 202
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| || ||||| ||||| ||||| ||||| || || || || || ||| |||
Sbjct 201 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACT 142
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || || || || || | || ||||| || ||||||||
Sbjct 141 TCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
>seq10900
Length=227893
Score = 122 bits (134), Expect = 2e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680
|||| || || || ||||| || || | | || || ||||||||||| ||||| ||||
Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285
Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740
| ||||| || ||||| || || |||||||||||||| |||||||| || || || || |
Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345
Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800
| || |||||| | || || || | || || ||||| || || | ||||| || |
Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405
Query 82801 ATATCTGCAT 82810
| ||||||||
Sbjct 197406 AGATCTGCAT 197415
>seq9876
Length=23795
Score = 86.0 bits (94), Expect = 1e-11
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| |||| ||| |||| || || || | ||||||||| || || || || || || ||
Sbjct 12956 ACCGCCTCGCAAGCGCAACACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCCGA 12897
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
| | || || ||||| | ||| || ||||||||||| | |||||| |||||||| ||
Sbjct 12896 CAATGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGG 12837
Query 82703 TATTCCT 82709
||||||
Sbjct 12836 AATTCCT 12830
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981674533234104
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