Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 102 8e-17
seq7200 91.5 1e-13
seq9711 89.7 5e-13
seq10234 84.2 2e-11
>seq6771
Length=7421
Score = 102 bits (112), Expect = 8e-17
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || || || ||||| || |||| || |||||||| || ||||| |||||||| |||
Sbjct 249 TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTG 190
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| |||| | ||| | ||||| | | || || |||| |||||
Sbjct 189 TCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATA 130
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
||||| || || |||||||||||||| ||||||||| ||
Sbjct 129 GTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGCCT 91
Score = 84.2 bits (92), Expect = 2e-11
Identities = 116/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||| ||||| ||| |||| || ||||| || || || || || || || |||
Sbjct 477 TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTG 418
Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| ||| ||| |||| | | ||| | || || | | || || || | |||||
Sbjct 417 TCCTGGAT-TTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGAT 359
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
||||| ||||| |||||||||||||| ||||||||| ||
Sbjct 358 AGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGCCT 319
>seq7200
Length=105881
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || || ||||| || || |||||||| | ||| ||| |||||| ||
Sbjct 105346 AAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACC-GTCCTCAAG 105288
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|| ||||| || | || | | ||||| || ||||| || |||||||| || |||
Sbjct 105287 TTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCT-TGAA 105229
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||||||| || | || | |||||| | | ||| || || | |||| |||||| |
Sbjct 105228 TTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTC 105169
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| || |||||||| || |||||||||||
Sbjct 105168 CTGTGAGAGTTTTGACAAAAATCTGCAT 105141
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | ||| || || || || ||||| ||||| | || ||| | ||||| ||
Sbjct 105118 AAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCA-TCCTCAAG 105060
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||| || || | || | | |||||| || || ||||||||||| || || |||
Sbjct 105059 TTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCT-TGAA 105001
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | ||||| ||| || | | ||| || || | |||| ||| || |
Sbjct 105000 TTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTC 104941
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| ||||| || |||||||||||
Sbjct 104940 CAGTCAGGGTTTTAACAAAAATCTGCAT 104913
>seq9711
Length=151070
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512
||||| | ||| || |||||||| || ||||| ||| | ||| ||| || || |
Sbjct 103997 AAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAA--GTGTACGGCCATCTTCCA 103940
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| || || || ||| | || | | |||||| || |||||||| |||||||| || |||
Sbjct 103939 GTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCT-TGA 103881
Query 133573 TCTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| |||| || | |||| ||||| | | || || || | || | |||||||
Sbjct 103880 ATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTG 103821
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || |||||||| || |||||||||||
Sbjct 103820 CCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
>seq10234
Length=192330
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 148250 CAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCT 148309
||||| | |||| || | |||||| || | | ||||||| || || | |||||
Sbjct 1854 CAGATGCGGATTGACGATGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCT 1913
Query 148310 CGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369
||| ||||||||| || ||||| || || |||||||| || |||| ||||| |||||
Sbjct 1914 CGTGTACGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCAT 1973
Query 148370 GTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGC 148429
|||| | ||||| || | || ||| | || || || | ||||| | |
Sbjct 1974 AGGTGCTATTAAAAGCGAATTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATC 2033
Query 148430 CCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480
||| ||||| || | ||| | |||||||||||||| || || || ||
Sbjct 2034 CCAATCCCACAGATCTGTTGGTTTAACGTTCCACATGTCATATTGGAGGAT 2084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483347465064640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |