Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6771 102 8e-17 seq7200 91.5 1e-13 seq9711 89.7 5e-13 seq10234 84.2 2e-11 >seq6771 Length=7421 Score = 102 bits (112), Expect = 8e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || || ||||| || |||| || |||||||| || ||||| |||||||| ||| Sbjct 249 TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTG 190 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| |||| | ||| | ||||| | | || || |||| ||||| Sbjct 189 TCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATA 130 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||||| || || |||||||||||||| ||||||||| || Sbjct 129 GTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGCCT 91 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| ||||| ||| |||| || ||||| || || || || || || || ||| Sbjct 477 TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTG 418 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| |||| | | ||| | || || | | || || || | ||||| Sbjct 417 TCCTGGAT-TTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGAT 359 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||||| ||||| |||||||||||||| ||||||||| || Sbjct 358 AGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGCCT 319 >seq7200 Length=105881 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || || |||||||| | ||| ||| |||||| || Sbjct 105346 AAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACC-GTCCTCAAG 105288 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || | || | | ||||| || ||||| || |||||||| || ||| Sbjct 105287 TTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCT-TGAA 105229 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||| || | || | |||||| | | ||| || || | |||| |||||| | Sbjct 105228 TTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTC 105169 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| || ||||||||||| Sbjct 105168 CTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || || || || ||||| ||||| | || ||| | ||||| || Sbjct 105118 AAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCA-TCCTCAAG 105060 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || | | |||||| || || ||||||||||| || || ||| Sbjct 105059 TTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCT-TGAA 105001 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||||| ||| || | | ||| || || | |||| ||| || | Sbjct 105000 TTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTC 104941 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||| || ||||||||||| Sbjct 104940 CAGTCAGGGTTTTAACAAAAATCTGCAT 104913 >seq9711 Length=151070 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||| || |||||||| || ||||| ||| | ||| ||| || || | Sbjct 103997 AAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAA--GTGTACGGCCATCTTCCA 103940 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || || || ||| | || | | |||||| || |||||||| |||||||| || ||| Sbjct 103939 GTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCT-TGA 103881 Query 133573 TCTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| |||| || | |||| ||||| | | || || || | || | ||||||| Sbjct 103880 ATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTG 103821 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||| || ||||||||||| Sbjct 103820 CCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 >seq10234 Length=192330 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 148250 CAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCT 148309 ||||| | |||| || | |||||| || | | ||||||| || || | ||||| Sbjct 1854 CAGATGCGGATTGACGATGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCT 1913 Query 148310 CGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCAT 148369 ||| ||||||||| || ||||| || || |||||||| || |||| ||||| ||||| Sbjct 1914 CGTGTACGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCAT 1973 Query 148370 GTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGC 148429 |||| | ||||| || | || ||| | || || || | ||||| | | Sbjct 1974 AGGTGCTATTAAAAGCGAATTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATC 2033 Query 148430 CCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 ||| ||||| || | ||| | |||||||||||||| || || || || Sbjct 2034 CCAATCCCACAGATCTGTTGGTTTAACGTTCCACATGTCATATTGGAGGAT 2084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483347465064640