Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_024783.1 Length=44332 Score E Sequences producing significant alignments: (Bits) Value seq7345 80.6 8e-11 >seq7345 Length=15758 Score = 80.6 bits (88), Expect = 8e-11 Identities = 220/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 18084 ACTGAGATTATCGACGCCCGCCTGCGTTACCCGCTAACCGCGCTGTTGTTTGTGGAGTTC 18143 || ||| | |||||||| ||||| |||||| || || ||| ||| || |||||| Sbjct 7887 ACCGAGGTGATCGACGCGAAGCTGCGCTACCCGAACACGGCCCTGCTGTACGTCGAGTTC 7946 Query 18144 GACGCCAAAGCGTTCCAG-AACATCCCGCGCGTGTC-CA-TCAAGTGCAAAGGCCGCAAA 18200 ||| | ||| | ||| ||||| ||| || |||| || || | ||| || || || Sbjct 7947 AGCGC-AGAGCAGTTCAGCAACATTCCG-GC-TGTCACAGTCGACTGCCGCGGGCGGAAG 8003 Query 18201 GTTCTAATACCGAACAACTACGATCCGATTAATCATACATATTCCGGGGACTGGGACGGC 18260 || | | | |||| ||| ||||||||| | | | || ||| |||||||||| Sbjct 8004 GTCCAAGTGCCGAGCAATTACGATCCGGAGACCCGGGCCTACCTCGGCATCTGGGACGGC 8063 Query 18261 ACGTTTAAACGCGCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACT 18320 ||| | |||| || ||||| || ||||| | |||||| ||||| || | | Sbjct 8064 ACGATGAAACAGGCCTGGACCGACAACCCGGTCTGGCACACCTACGACATCGTGACCAAC 8123 Query 18321 GAGCGCTTCGGCCTCGGTCGGCGTATCAAACCGCAAATGTTAAACCGGTACGCGCTCTAC 18380 || |||||||| | ||| || ||||| | ||| || |||| | | | | ||| Sbjct 8124 GATCGCTTCGGTGTGGGTAAACGCATCAAGGCCTGGATGGTAGACCGTTGGGAGATGTAC 8183 Query 18381 CAGATTGCGCAGCGCTGCGATCAGTTGGT 18409 | |||| | ||| |||||| |||||||| Sbjct 8184 CGGATTTCCCAGTACTGCGACCAGTTGGT 8212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141720373024608