Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_025115.1
Length=40002
Score E
Sequences producing significant alignments: (Bits) Value
seq5876 82.4 2e-11
>seq5876
Length=2238
Score = 82.4 bits (90), Expect = 2e-11
Identities = 145/209 (69%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 39048 GTGGCCGCGCCAGAGCGCCGGGTTCTCGCCGCTGCGCTTGCCAAGGACCTTGGCGGCATC 39107
||| |||||||| ||||||||||||| || |||||||| | || | | |||||
Sbjct 346 GTGCCCGCGCCATCGCGCCGGGTTCTCCCCACTGCGCTTCTTCTGCACGGTCACCGCATC 287
Query 39108 GAGCACGCACTCAATGCGCCCGCGTACGCGGCTGGCCGTCTCCGCCTTCTTCATCCAGAT 39167
|||||| ||| ||||| |||||||||||||| ||||| | ||| | |||||||
Sbjct 286 AAGCACGGCCTCCATGCGTTGCCGTACGCGGCTGGCAGTCTCTGTCTTGGTGGTCCAGAT 227
Query 39168 GGGTTGCAGTACGCGCACGACCATGC-CCGTGTCGATGTCGCGCACGTCCACATCGCCGA 39226
|| ||| || || || ||||| | || |||||| ||| || || ||||
Sbjct 226 TGGCCGCAACACTGCCAGGA-CATGCTCGGTCTCGATGCGATCCACTCGCAGGTCCCCGA 168
Query 39227 TGACCGGGTAGGCGTAGGTCTCAAGGGTG 39255
||||| | || || ||||| || |||
Sbjct 167 GCACCGGTTTTGCATAAGTCTCCAGCGTG 139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127866369882048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |