Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq5876 82.4 2e-11 >seq5876 Length=2238 Score = 82.4 bits (90), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 39048 GTGGCCGCGCCAGAGCGCCGGGTTCTCGCCGCTGCGCTTGCCAAGGACCTTGGCGGCATC 39107 ||| |||||||| ||||||||||||| || |||||||| | || | | ||||| Sbjct 346 GTGCCCGCGCCATCGCGCCGGGTTCTCCCCACTGCGCTTCTTCTGCACGGTCACCGCATC 287 Query 39108 GAGCACGCACTCAATGCGCCCGCGTACGCGGCTGGCCGTCTCCGCCTTCTTCATCCAGAT 39167 |||||| ||| ||||| |||||||||||||| ||||| | ||| | ||||||| Sbjct 286 AAGCACGGCCTCCATGCGTTGCCGTACGCGGCTGGCAGTCTCTGTCTTGGTGGTCCAGAT 227 Query 39168 GGGTTGCAGTACGCGCACGACCATGC-CCGTGTCGATGTCGCGCACGTCCACATCGCCGA 39226 || ||| || || || ||||| | || |||||| ||| || || |||| Sbjct 226 TGGCCGCAACACTGCCAGGA-CATGCTCGGTCTCGATGCGATCCACTCGCAGGTCCCCGA 168 Query 39227 TGACCGGGTAGGCGTAGGTCTCAAGGGTG 39255 ||||| | || || ||||| || ||| Sbjct 167 GCACCGGTTTTGCATAAGTCTCCAGCGTG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127866369882048