Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7200 104 2e-17 seq6771 93.3 3e-14 seq9876 87.8 1e-12 >seq7200 Length=105881 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| || | || ||||| | || |||||||| ||||||||||| || Sbjct 105368 ACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGA 105309 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| |||| || | |||||| || ||||| ||||| | |||||||| | || Sbjct 105308 AAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGG 105249 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| || || || | || | ||||| | || | Sbjct 105248 AATTCCTTCCTTATCTTGAATTTT-TGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGA 105190 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 105189 CTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| || ||||| || ||||| || || | || ||| |||| || Sbjct 104893 ACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCA 104834 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||||| ||||| |||||||||||||| || | || | ||||||||||| | Sbjct 104833 AGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGA 104774 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || || || | || | ||||| | || || |||| || || || || Sbjct 104773 ATCTT-TGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTT 104715 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || || ||||| || || || ||||||||||| Sbjct 104714 TCCAGTCAACGTCTTCACGAAAATCTGCATAGT 104682 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | |||||| | |||||||| | || ||||| || || ||||| || || Sbjct 105824 ACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGA 105765 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || |||| |||||||||||||| || || | ||| |||||| | || Sbjct 105764 AAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGG 105705 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || |||||| | || |||| || | ||||| || || | Sbjct 105704 GATTCCTTCCTTATCCTGAATTTT-GGCTTTGACATTTTCGATCGTGTCCGATGCCTCAA 105646 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || ||||| || || || |||||| Sbjct 105645 CTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATA 105596 >seq6771 Length=7421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || || || || ||||| || ||||| || || | | || || Sbjct 303 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTCA 244 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| || |||||||| | ||||||||||||| | || | ||||||||||| Sbjct 243 AGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 184 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | || |||| || | ||||| | ||| || || | ||||| ||||| Sbjct 183 ATCTT-AGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTT 125 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | |||||||| ||||||||||| Sbjct 124 ACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| ||||||||||| || || || | | || || | ||||| || || ||| Sbjct 513 TCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAA 454 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | |||||| ||||| | || | || |||||||| ||||| |||| || | Sbjct 453 ATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTC-ACGTT 395 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | ||| || |||| ||||| |||||||| || | |||||||| Sbjct 394 CTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTAC 335 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 334 GAAGATCTGCAT 323 >seq9876 Length=23795 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| |||| ||| || ||||||||||||| ||| || ||||| |||||||| || | Sbjct 12957 CACCGCCTCGCAAGCGCAACACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCCG 12898 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | ||| | | || |||||||| || || ||||| ||||| | ||||||||| ||| Sbjct 12897 ACAATGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCG 12838 Query 33641 G 33641 | Sbjct 12837 G 12837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328655382213120