Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7200 131 2e-25 seq9711 113 4e-20 seq6771 111 1e-19 >seq7200 Length=105881 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||||||| | | |||| ||||| ||||| |||||||| | || Sbjct 105818 ACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGT 105759 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| |||||||| |||| | |||||| | ||||||||||||||| || || Sbjct 105758 ACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCC 105699 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| ||| | | ||| | || || | | ||| ||||| | Sbjct 105698 TTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAA 105639 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| ||||| | |||||| ||||| Sbjct 105638 TGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | |||||| || | | || || ||||| || |||||||| || ||| Sbjct 104906 ACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGT 104847 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| |||||||| || | | |||| | |||||| || || || || ||||| Sbjct 104846 ACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCC 104787 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| ||| ||||| | || | ||| || | | ||| || || | Sbjct 104786 TTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAG 104727 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | |||||||||||| Sbjct 104726 AGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||||||| | | |||| || |||||||| || || || | || Sbjct 105134 ACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGT 105075 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || || || || || | | |||| | | ||| |||||||| || ||||| Sbjct 105074 ACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCC 105015 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| |||||| ||| | | || | ||||| | | ||| || || | Sbjct 105014 TTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAA 104955 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| ||||| | ||||||||||| Sbjct 104954 AGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||| ||||| | |||| ||||||||||||||||| || | || Sbjct 105362 ACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGT 105303 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || || ||||| || | | |||| | | || ||||| ||||| || || Sbjct 105302 GCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCC 105243 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||||||| ||| | | ||| | || || | | ||| ||||| | Sbjct 105242 TTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAA 105183 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || |||||||| | ||||||||||| Sbjct 105182 TGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 >seq9711 Length=151070 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||||||| | | | || ||||| ||||||||||||||| | || Sbjct 104013 ACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGT 103954 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| || ||||| || | |||||| | ||| ||||| ||||| || || Sbjct 103953 ACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCC 103894 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| ||| | | ||| | || || | | || || || | Sbjct 103893 TTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAA 103834 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| |||||||| | ||||||||||| Sbjct 103833 TGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||||||||| | |||||||| |||||||||||||| | ||||| ||| Sbjct 103776 CAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGACCATC 103717 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||| |||| | |||||| | ||||||||||||||| || ||||| ||||| Sbjct 103716 TTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATC 103657 >seq6771 Length=7421 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| ||| | | || || || || ||||| |||||| | || | | Sbjct 309 CGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCA 250 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | | ||||||||||| ||||||||||| ||||||||||| Sbjct 249 TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTG 190 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | ||| || | | || ||||||| || | Sbjct 189 TCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATA 130 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||||||||||| |||||||||| ||| ||||||||| || Sbjct 129 GTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGCCT 91 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||||||| || || | |||| || ||||| |||||||| || | || | | Sbjct 537 CGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCA 478 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | ||||||||||||||||| || || || || ||||| Sbjct 477 TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTG 418 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | || | |||||| | | || ||||| | || | Sbjct 417 TCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATA 358 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 |||||||| || |||||||||| ||| ||||||||| || Sbjct 357 GTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGCCT 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476538898080960