Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq5725 107 7e-19 >seq5725 Length=1648 Score = 107 bits (118), Expect = 7e-19 Identities = 209/304 (69%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATT--CACCACGGACTGCGCCTGCT 36770 ||||||| || || ||||| ||||||||||||||| | || | ||| | ||| || Sbjct 1345 TCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTGGCCAGCGCGGTCGAAGCC--CT 1402 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830 | | | | | ||||| || || | ||||| || || ||||||| ||||| Sbjct 1403 GAACGAATCGCGGGTGCAGCGCCTGATCCTGGTGCGCCCGGCGGTGGAGGCCGGCGAGAA 1462 Query 36831 GCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCT 36890 ||| |||| ||||||||||| | | ||||| | | || |||||| ||| || Sbjct 1463 GCTGGGCTTCCTGCCCGGCGACCTGAGCCAGAAGGTCGACCCCTACCTGCGACCGCTGTA 1522 Query 36891 GGACGCGGTGATCGACCTGGTTGGCCCGACGA---TGGCCAAGCGCCTGCAGGAGACCCG 36947 ||||| || ||| || | ||| | || ||| ||||| ||| || ||| | | Sbjct 1523 CGACGCCCTGTACGAGATGATGGGCGTGGAGAAGGTGGTCAAGCTGCTGGAGAAGAAC-G 1581 Query 36948 CCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCT 37007 || |||||||||| ||||||||||||||||| ||||| || ||||||| ||||| | Sbjct 1582 TCA--TCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTCAACGATGCGTTCGT 1639 Query 37008 CATC 37011 ||| Sbjct 1640 GATC 1643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180770744469168