Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq10234 118 1e-21
seq10678 116 5e-21
seq5599 111 2e-19
>seq10234
Length=192330
Score = 118 bits (130), Expect = 1e-21
Identities = 242/356 (68%), Gaps = 8/356 (2%)
Strand=Plus/Plus
Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175
|||| |||||||| ||||| | ||| || ||| | ||||| ||||||||| ||||||
Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521
Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235
|| || | ||||| ||||| ||| || | ||| | || || ||||| ||
Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATCAA 2581
Query 69236 AATCAAA-----TCGTCCATCTAT-AACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289
||||||| | || | ||| ||||||||| || | || | |||||||| ||| |
Sbjct 2582 AATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATTGC 2641
Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349
| || || || || || | | ||||| | || || ||||| ||||| |||||||
Sbjct 2642 ACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTACATT 2701
Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG-TTACAGGCGTCCTTGTAAAGAATA 69408
||||||| || | || || ||||| | |||| | ||||| || || ||||| |||
Sbjct 2702 TGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGCATA 2760
Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464
| || || ||||| || | || ||| || ||| | |||| || | ||| ||
Sbjct 2761 TAAGGTGTTCCAGTCTCTACTTGGGATCTGAGAATGGCGATCCATACAATCCTGGC 2816
Score = 95.1 bits (104), Expect = 2e-14
Identities = 184/272 (68%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 68659 ATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATT 68718
|| || |||| ||| ||| ||| | || ||| ||| || ||||||||||| || ||
Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
||| || |||||||| || | | ||| ||||| || || || ||||| | |||
Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|| ||||| || | ||| || || || || || |||||||||||||| | || | |
Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAA 1992
Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898
|| || | || || | ||| || || | | | ||||||||| ||||| | |
Sbjct 1993 TTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAATCCCACAGATCTGTT 2052
Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930
||| ||| ||||| | || ||||| || ||
Sbjct 2053 GGTTTAACGTTCCACATGTCATATTGGAGGAT 2084
Score = 95.1 bits (104), Expect = 2e-14
Identities = 186/275 (68%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021
|||| | || ||||| || |||| | || | || ||||||| ||| || || || |
Sbjct 3568 GAAATTACCTGGACATCTGCTGATTGTTGGTACAGGCGTTAAATAGTGTTGGTGAAGCAT 3627
Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081
| || || || |||||| | |||||| || || |||||| || || || |
Sbjct 3628 GCGTAAAATATCGTTCAGACAAATAATTGTACGTCTCTATAGCTTTGTCAATGTCATTTT 3687
Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141
||||| || | || || | |||||||||||| ||||| | || || |||| ||
Sbjct 3688 CGTGAATACCAACAGCCACTCTCATCAACATATGTTGAGGCCTCTCAACTATTTTGCCAT 3747
Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201
| ||||||| ||| || | | || || |||||||| |||| ||| || || ||||
Sbjct 3748 TAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTTAAAACCAATATAATTATAATTGAAGT 3807
Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTTTATCC 70236
||| || || || ||| |||||| ||| | |||
Sbjct 3808 CTCGATCATATATTATAGCAGAATCCAGTCTCTCC 3842
>seq10678
Length=68604
Score = 116 bits (128), Expect = 5e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941
||| ||| || || || | || | ||||||||| ||||| || || || || ||||| |
Sbjct 45495 TAATATAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATATTCTCTATGGCCATTT 45436
Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001
| || ||||| ||||| | |||||||| | || ||||| || |||||||| ||
Sbjct 45435 GGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAATCA 45376
Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061
||| || || || || |||||| |||||| ||||||||||| ||||| ||||| |
Sbjct 45375 GATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAGT 45316
Query 40062 ATTTTTCATCGG 40073
|| |||| ||||
Sbjct 45315 ATCTTTCGTCGG 45304
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173
||||||||| ||||||||||| || | |||||||| ||||| | ||| |||||| |
Sbjct 44965 TACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGG 44906
Query 40174 ATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207
|||||| || |||||||| || || | |||||||
Sbjct 44905 ATATTGAATAGGAAAAATTACGAAACGATTTGGA 44872
>seq5599
Length=16320
Score = 111 bits (122), Expect = 2e-19
Identities = 91/111 (82%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575
||| |||||||| |||||| | ||| |||||||||||||||| ||||||||||||
Sbjct 14281 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGACACATCAAACT 14222
Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626
||||| |||||||| | ||| ||||||||||||| ||| ||| |||| ||
Sbjct 14221 CCACATATCATCATTATAAACACGTTTCATAAATAAATCTGGAGTCCACAG 14171
Score = 93.3 bits (102), Expect = 6e-14
Identities = 108/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| ||||||| | || |||||||||||||| | ||| |||||||| ||||| |||||||
Sbjct 13217 CACCACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTA 13158
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACA-AGTAGCTGCTATTTCCGCAGCTAACGTA 70449
| || || || ||||| || || | || ||| || || |||| || || || ||
Sbjct 13157 AGGTTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTA 13099
Query 70450 TCTAATTCTATAGTTGTAACTCC 70472
|| ||||| |||||||| |||||
Sbjct 13098 TCCAATTCGATAGTTGTTACTCC 13076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686804595935040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |