Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10234 118 1e-21 seq10678 116 5e-21 seq5599 111 2e-19 >seq10234 Length=192330 Score = 118 bits (130), Expect = 1e-21 Identities = 242/356 (68%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||| ||||| | ||| || ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 || || | ||||| ||||| ||| || | ||| | || || ||||| || Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATCAA 2581 Query 69236 AATCAAA-----TCGTCCATCTAT-AACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 ||||||| | || | ||| ||||||||| || | || | |||||||| ||| | Sbjct 2582 AATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATTGC 2641 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || || || || | | ||||| | || || ||||| ||||| ||||||| Sbjct 2642 ACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTACATT 2701 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG-TTACAGGCGTCCTTGTAAAGAATA 69408 ||||||| || | || || ||||| | |||| | ||||| || || ||||| ||| Sbjct 2702 TGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGCATA 2760 Query 69409 AACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 | || || ||||| || | || ||| || ||| | |||| || | ||| || Sbjct 2761 TAAGGTGTTCCAGTCTCTACTTGGGATCTGAGAATGGCGATCCATACAATCCTGGC 2816 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 68659 ATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATT 68718 || || |||| ||| ||| ||| | || ||| ||| || ||||||||||| || || Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||| || |||||||| || | | ||| ||||| || || || ||||| | ||| Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || ||||| || | ||| || || || || || |||||||||||||| | || | | Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAA 1992 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 || || | || || | ||| || || | | | ||||||||| ||||| | | Sbjct 1993 TTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAATCCCACAGATCTGTT 2052 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||| ||| ||||| | || ||||| || || Sbjct 2053 GGTTTAACGTTCCACATGTCATATTGGAGGAT 2084 Score = 95.1 bits (104), Expect = 2e-14 Identities = 186/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||| | || ||||| || |||| | || | || ||||||| ||| || || || | Sbjct 3568 GAAATTACCTGGACATCTGCTGATTGTTGGTACAGGCGTTAAATAGTGTTGGTGAAGCAT 3627 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 | || || || |||||| | |||||| || || |||||| || || || | Sbjct 3628 GCGTAAAATATCGTTCAGACAAATAATTGTACGTCTCTATAGCTTTGTCAATGTCATTTT 3687 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 ||||| || | || || | |||||||||||| ||||| | || || |||| || Sbjct 3688 CGTGAATACCAACAGCCACTCTCATCAACATATGTTGAGGCCTCTCAACTATTTTGCCAT 3747 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | ||||||| ||| || | | || || |||||||| |||| ||| || || |||| Sbjct 3748 TAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTTAAAACCAATATAATTATAATTGAAGT 3807 Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTTTATCC 70236 ||| || || || ||| |||||| ||| | ||| Sbjct 3808 CTCGATCATATATTATAGCAGAATCCAGTCTCTCC 3842 >seq10678 Length=68604 Score = 116 bits (128), Expect = 5e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39882 TAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCT 39941 ||| ||| || || || | || | ||||||||| ||||| || || || || ||||| | Sbjct 45495 TAATATAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATATTCTCTATGGCCATTT 45436 Query 39942 GAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCA 40001 | || ||||| ||||| | |||||||| | || ||||| || |||||||| || Sbjct 45435 GGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAATCA 45376 Query 40002 AATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 ||| || || || || |||||| |||||| ||||||||||| ||||| ||||| | Sbjct 45375 GATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAGT 45316 Query 40062 ATTTTTCATCGG 40073 || |||| |||| Sbjct 45315 ATCTTTCGTCGG 45304 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||||||||| ||||||||||| || | |||||||| ||||| | ||| |||||| | Sbjct 44965 TACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGG 44906 Query 40174 ATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 |||||| || |||||||| || || | ||||||| Sbjct 44905 ATATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 >seq5599 Length=16320 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| |||||| | ||| |||||||||||||||| |||||||||||| Sbjct 14281 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGACACATCAAACT 14222 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAG 69626 ||||| |||||||| | ||| ||||||||||||| ||| ||| |||| || Sbjct 14221 CCACATATCATCATTATAAACACGTTTCATAAATAAATCTGGAGTCCACAG 14171 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || ||||||| | || |||||||||||||| | ||| |||||||| ||||| ||||||| Sbjct 13217 CACCACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTA 13158 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACA-AGTAGCTGCTATTTCCGCAGCTAACGTA 70449 | || || || ||||| || || | || ||| || || |||| || || || || Sbjct 13157 AGGTTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTA 13099 Query 70450 TCTAATTCTATAGTTGTAACTCC 70472 || ||||| |||||||| ||||| Sbjct 13098 TCCAATTCGATAGTTGTTACTCC 13076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686804595935040