Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq2842 116 2e-21 >seq2842 Length=3006 Score = 116 bits (128), Expect = 2e-21 Identities = 144/192 (75%), Gaps = 15/192 (8%) Strand=Plus/Plus Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008 || |||||| | || || |||||||||| |||||| ||||| || ||||| ||||||||| Sbjct 1768 CTCAGCTGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCTCGGTGTGCCGTTCAACATC 1827 Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGC---GGCCACGG---TCGGCATGCAGGCC 22062 |||||||||||||||||||| ||| | |||| |||||| | | ||| || ||| Sbjct 1828 GCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCGTG--GGCG 1885 Query 22063 GAGAAGTTCATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGC- 22121 || ||| | ||| |||||| |||||||||||||||||| | || ||||| Sbjct 1886 ACTTCGTGCATACG--CTG--GGTGACGCGCACCTGTACTCGAACCACTTCGAGCAGGCC 1941 Query 22122 --CAAGCAGCTG 22131 | |||||||| Sbjct 1942 CGCGAGCAGCTG 1953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236608198695896